Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq194 196 9e-45
seq87 118 2e-21
seq58 87.8 3e-12
>seq194
Length=1535482
Score = 196 bits (216), Expect = 9e-45
Identities = 189/243 (78%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||| ||
Sbjct 139813 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACTTGT 139754
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
|| || || | | ||||| ||||||| |||||||| || | ||||||| ||||||
Sbjct 139753 TCGCGGAGGAGGCCGGCGGTGCTGGACAGCCCTGCGTTCTCGGCCTTGAGCGTCTTCACC 139694
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 139693 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCAGC 139634
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| |||||||||| |||||||| ||||||| ||| ||
Sbjct 139633 CGGTTCCGCAGCCGCTTGCGCTCCACCTTGATGCGCTCCTGGTCTTCCATGTTGATGGGC 139574
Query 241625 GAC 241627
|||
Sbjct 139573 GAC 139571
>seq87
Length=9819979
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|| || | ||| ||||| || |||||||| || ||||| | | || || | |||
Sbjct 4264817 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCCGTGGACGCCAGC 4264758
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | | ||||||| |||||| || |||||||| |||| |||||| |||||
Sbjct 4264757 TCGGTGTTCTGACTCTTGAGCGTCTTCACCTTTTCCTCCAGGCGCGAGATGCGCTCCAGC 4264698
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
||||| ||||| |||| ||| || | ||| || || || | ||| || |||||||||
Sbjct 4264697 TTGCGTTTCCGGCACTTGGAGGCGGCGATGCGATTGCGCAGCCGCTTGCGCTCCGCCTTG 4264638
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| || || ||||||||||| || |||
Sbjct 4264637 ATGCGCTCTTGTGTGTCCATGTCGATGGGCGAC 4264605
>seq58
Length=14941408
Score = 87.8 bits (96), Expect = 3e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 7857368 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 7857309
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | ||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 7857308 GCGATACGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 7857249
Query 241619 ATCGGAGA 241626
|| || ||
Sbjct 7857248 ATGGGGGA 7857241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931405901944320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |