Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq194 196 9e-45 seq87 118 2e-21 seq58 87.8 3e-12 >seq194 Length=1535482 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||| || Sbjct 139813 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACTTGT 139754 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 || || || | | ||||| ||||||| |||||||| || | ||||||| |||||| Sbjct 139753 TCGCGGAGGAGGCCGGCGGTGCTGGACAGCCCTGCGTTCTCGGCCTTGAGCGTCTTCACC 139694 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 139693 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCAGC 139634 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| |||||||||| |||||||| ||||||| ||| || Sbjct 139633 CGGTTCCGCAGCCGCTTGCGCTCCACCTTGATGCGCTCCTGGTCTTCCATGTTGATGGGC 139574 Query 241625 GAC 241627 ||| Sbjct 139573 GAC 139571 >seq87 Length=9819979 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| || ||||| | | || || | ||| Sbjct 4264817 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCCGTGGACGCCAGC 4264758 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | ||||||| |||||| || |||||||| |||| |||||| ||||| Sbjct 4264757 TCGGTGTTCTGACTCTTGAGCGTCTTCACCTTTTCCTCCAGGCGCGAGATGCGCTCCAGC 4264698 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| ||||| |||| ||| || | ||| || || || | ||| || ||||||||| Sbjct 4264697 TTGCGTTTCCGGCACTTGGAGGCGGCGATGCGATTGCGCAGCCGCTTGCGCTCCGCCTTG 4264638 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || || ||||||||||| || ||| Sbjct 4264637 ATGCGCTCTTGTGTGTCCATGTCGATGGGCGAC 4264605 >seq58 Length=14941408 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 7857368 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 7857309 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | ||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 7857308 GCGATACGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 7857249 Query 241619 ATCGGAGA 241626 || || || Sbjct 7857248 ATGGGGGA 7857241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931405901944320