Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq56 114 2e-20 seq6 96.9 6e-15 >seq56 Length=15139244 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || |||| ||| || |||||||| ||||| |||| Sbjct 9265155 TGGTGGCCTTTGCTGCTGTGGAAGGGGTCTTCTTCTCAGGGTCGTTTGCTGCCATATTCT 9265214 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| ||| ||||||||| || |||||||| |||||||||||||| | Sbjct 9265215 GGCTAAAGAAGAGAGGGCTCATGCCCGGACTCACGTTTTCCAATGAGCTCATCAGCAGAG 9265274 Query 26003 ACGAGG 26008 | |||| Sbjct 9265275 ATGAGG 9265280 >seq6 Length=52350410 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/182 (72%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||| ||||||||||||| || ||| | || ||||| ||||| | | |||||| Sbjct 1187005 GTAGCTCTTGCTGCTGTGGAAGGAATCATCTTTTCTGGTTCTTTTGCACCAACATTCTGG 1187064 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||| | | |||| ||||| || || |||||||| ||||| || || || Sbjct 1187065 CTCAGGAAACAGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATTAGTCAAGAT 1187124 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||||| ||| | ||||||||||||||| | | || | |||||| | |||||||| Sbjct 1187125 GAGGGTCTACACTGTGATTTTGCCTGCCTGATGTTCAAG---CACTTGGTACACAAACCA 1187181 Query 26065 TC 26066 || Sbjct 1187182 TC 1187183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928718268117120