Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq189 154 2e-32 >seq189 Length=1716036 Score = 154 bits (170), Expect = 2e-32 Identities = 223/312 (71%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 153702 AGTTGAAGTGGTAACACAGGATGTA--AATTCATCACTTCGAT-CGCCCGCGTCCCTCAG 153758 ||| ||||||||||| ||||||| | ||| | | | || | || || ||| | | Sbjct 666400 AGTGGAAGTGGTAACCCAGGATGAAAGAATGCTGC---TGAATACACCAGCATCCTTACG 666456 Query 153759 ATGCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGT 153818 |||||| ||||||| | || ||| | || ||||| || ||||| || ||||| ||||| Sbjct 666457 ATGCTCTCTGAAAACGTCCCAGGAAGCCTTGATTGTGACTTGGCAGAAAAAGAAGGCTGT 666516 Query 153819 AGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATA 153878 | | |||||||| |||| ||| || ||||| |||||| || ||| | |||||| | || Sbjct 666517 AAGCCCAGAAAACATGGTCACTTACAGCAAGAACCACGGGGTTGTGGTCCAGCCCGCCTA 666576 Query 153879 TAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAA 153938 ||| || || | || || |||||| | || || ||| | || || || ||||| Sbjct 666577 TAAGGACAGGGTGAACATCACCGAACTGGGACTCCGGAACTCAACCATCACCTTCTGGAA 666636 Query 153939 TGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAA 153998 | ||| |||| || || |||||||| |||||||| || |||| || || ||||| || Sbjct 666637 CACGACATTGGAGGACGAGGGCTGTTACATGTGTCTCTTCAATACCTTTGGCTCTGGGAA 666696 Query 153999 GGTATCGGGAAC 154010 | | || ||||| Sbjct 666697 GATCTCAGGAAC 666708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649210749216480