Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq10 277 2e-69 seq189 96.9 4e-15 seq64 86.0 7e-12 >seq10 Length=48447015 Score = 277 bits (306), Expect = 2e-69 Identities = 661/989 (67%), Gaps = 9/989 (1%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| || |||| ||| |||| ||| || ||| | || || || ||| Sbjct 23182662 TGCCGCAGATGCTCATCCAAACAGTGGATGGCAAAGGGGTCGATATCCATATCAAACTTA 23182721 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| ||| | || |||||| || ||| || | || || | | Sbjct 23182722 TTGGCAAAAAAGTGGTGTT--TTC-GCAGCATCCAGCTCAAGTCCCCAGCTCCAAAGATG 23182778 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||||| || | ||| || || |||| || ||||| | ||||| || | || ||| Sbjct 23182779 CACACGGAGCGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCTCCCTTAGAAACATCA 23182838 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| | | || | |||||| || ||||||| Sbjct 23182839 CCTTCAAAGTACTGCCACTTGACAAACCTCACAACAGCATTCATGTCAGACAAGTCGTAT 23182898 Query 160287 TTGTA-CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | | ||| || | | |||| | | ||| || | || | |||||||| || Sbjct 23182899 TTGTGGCTTAAGGAGAGTGATCCAGGGACCTCAGGG-ATCCTTTGGATAGTGGCCCAGAG 23182957 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-AT-TAACCTG 160403 || || || ||||| || ||||||| | ||||||||| || |||| | || | | Sbjct 23182958 GTACTCATCTGGGCTATAAGTGTCCTGCGCCCATTCCATAAA-TCTCTGGATGTTTTCAT 23183016 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 || | || || | || || ||| | || |||||||| || ||||| || || Sbjct 23183017 TCTCT-AGCACATAGCCCACATATTCTCTACTGACCACAAAGTAGGCACTGCCTGAAAAC 23183075 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 | || | | | || ||| ||||| | || |||| | || | || ||| Sbjct 23183076 AGAGGGGTTTGGAGTGGGGGCCGCACTTTGGCAGTCCCCATGTTCGTCAGCTTCCCATTC 23183135 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | || | |||| |||||||| | || | | |||||| ||||| ||| Sbjct 23183136 ACAATGGCATAATGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCTTCTCCGTTTCT 23183195 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 || |||| | || ||| || || |||| | |||| ||||| ||||| || || | Sbjct 23183196 AGGTTGTTTTCTCCCATGAGTGACTTGAGCTTCCTGACAATCTCGAGGTTGGTTTTAATA 23183255 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 ||||| || | || |||| || |||| ||| |||| ||| |||| || ||| Sbjct 23183256 GGAAAATCCATCCCACACAGATTGATCAAGTATCTCCAGCGCGCACTCATTCGGTAGAGG 23183315 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| |||||| || | || ||||| || |||||||| || || || || || ||||| Sbjct 23183316 TCCTGCATGCAGTTGAGGTCGGCCTGAACTCGGCTCCATGATGCATAAACCACATTCTCC 23183375 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||||||||||||||||| |||||| || | || ||| |||||| ||| Sbjct 23183376 AACTGGCTGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCCTTCACCGCAGCTAAG 23183435 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 || ||| || | || ||||||||| | ||| || | ||||||||| ||||||| Sbjct 23183436 AAGGTCTCCTCTGATTTCTTGTCCACGTGGATGCAGTAGAAATTCTGAGGCATGTAGATG 23183495 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| || | ||| || ||||| ||||| | ||| || || || || || Sbjct 23183496 GCCCTTAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATGGAATATGCAATT 23183555 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 || || | | || || | ||| |||| | || | || || ||| ||||||| ||| Sbjct 23183556 GGGAAGTTCGCTTCTTCTCTACTGAGGGGTTCTGTAATATATTTGCGCATCTTGATGAAA 23183615 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | || || | |||||||| ||||| Sbjct 23183616 GAGGTGCAGTCGCTGGTCATGTTTATATA 23183644 >seq189 Length=1716036 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 167880 AGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCC 167938 || |||||| ||| ||| | |||||||||| | ||| |||| ||| |||||||| Sbjct 669414 AGAGTTTGCTTGTA-GTCGATCACAGTTCCCAGGTATAGCACCTGGCAGATCACCTCC-- 669358 Query 167939 GTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCC 167998 || || |||||| |||| || ||||| || | | ||||| || ||| ||| || || Sbjct 669357 -TTCCCCACTTGATTCTTGGGGTCTTTGACGCGGAGGATGCTGGTGACAGATGTGGTCCC 669299 Query 167999 ATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCC--TGCCACCTTCCAG 168056 ||| |||| | | | || || ||||| ||||||| || |||| ||||||| Sbjct 669298 ATTTGCATGTGACTGACTCTCGGTACTATTCTCGATCCCTGTCCCAATGCC--CTTCCAG 669241 Query 168057 AATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || || || ||||||||||| ||||||| Sbjct 669240 GAGATCACGGGGGCTGGGCGAGCAGTGGCAGAGCAGGTGATATTTA 669195 >seq64 Length=13628464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 176209 TGTTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCAT 176268 |||||||| | || | | | ||||| || | || |||| || |||| |||||| | Sbjct 2970341 TGTTGTTTCTGTCAACTTCCTTCAGATACTTGGCAAGCTCACTGGGGGAGTTATAATCTT 2970400 Query 176269 TAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTA 176328 ||||| || |||| | || ||| ||||| ||||| || |||| || || ||||| | Sbjct 2970401 CCACATGAATGAATGAATCTGCTGGGATGTAATTTTCGTAGTTTTCCCTAGATGGTCCCA 2970460 Query 176329 AAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAG 176388 ||| | || || | | || | || | ||||| |||||||| |||||| || Sbjct 2970461 GAACAACAGGCACAGAGCCAGCCAGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTT 2970520 Query 176389 TGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 |||| || ||||||||||| | | ||| || || || Sbjct 2970521 TGTGGATGGAGTTTTCAAAGGAAAGATAAAATTTGCA 2970557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577140568314480