Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq10 277 2e-69
seq189 96.9 4e-15
seq64 86.0 7e-12
>seq10
Length=48447015
Score = 277 bits (306), Expect = 2e-69
Identities = 661/989 (67%), Gaps = 9/989 (1%)
Strand=Plus/Plus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|| |||||||| || |||| ||| |||| ||| || ||| | || || || |||
Sbjct 23182662 TGCCGCAGATGCTCATCCAAACAGTGGATGGCAAAGGGGTCGATATCCATATCAAACTTA 23182721
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || || | ||||| ||| | || |||||| || ||| || | || || | |
Sbjct 23182722 TTGGCAAAAAAGTGGTGTT--TTC-GCAGCATCCAGCTCAAGTCCCCAGCTCCAAAGATG 23182778
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| ||||| || | ||| || || |||| || ||||| | ||||| || | || |||
Sbjct 23182779 CACACGGAGCGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCTCCCTTAGAAACATCA 23182838
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
||||| ||||||||||||| |||||||| | | || | |||||| || |||||||
Sbjct 23182839 CCTTCAAAGTACTGCCACTTGACAAACCTCACAACAGCATTCATGTCAGACAAGTCGTAT 23182898
Query 160287 TTGTA-CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345
|||| | | ||| || | | |||| | | ||| || | || | |||||||| ||
Sbjct 23182899 TTGTGGCTTAAGGAGAGTGATCCAGGGACCTCAGGG-ATCCTTTGGATAGTGGCCCAGAG 23182957
Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-AT-TAACCTG 160403
|| || || ||||| || ||||||| | ||||||||| || |||| | || | |
Sbjct 23182958 GTACTCATCTGGGCTATAAGTGTCCTGCGCCCATTCCATAAA-TCTCTGGATGTTTTCAT 23183016
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
|| | || || | || || ||| | || |||||||| || ||||| || ||
Sbjct 23183017 TCTCT-AGCACATAGCCCACATATTCTCTACTGACCACAAAGTAGGCACTGCCTGAAAAC 23183075
Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
| || | | | || ||| ||||| | || |||| | || | || |||
Sbjct 23183076 AGAGGGGTTTGGAGTGGGGGCCGCACTTTGGCAGTCCCCATGTTCGTCAGCTTCCCATTC 23183135
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
|| | || | |||| |||||||| | || | | |||||| ||||| |||
Sbjct 23183136 ACAATGGCATAATGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCTTCTCCGTTTCT 23183195
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643
|| |||| | || ||| || || |||| | |||| ||||| ||||| || || |
Sbjct 23183196 AGGTTGTTTTCTCCCATGAGTGACTTGAGCTTCCTGACAATCTCGAGGTTGGTTTTAATA 23183255
Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
||||| || | || |||| || |||| ||| |||| ||| |||| || |||
Sbjct 23183256 GGAAAATCCATCCCACACAGATTGATCAAGTATCTCCAGCGCGCACTCATTCGGTAGAGG 23183315
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
||| |||||| || | || ||||| || |||||||| || || || || || |||||
Sbjct 23183316 TCCTGCATGCAGTTGAGGTCGGCCTGAACTCGGCTCCATGATGCATAAACCACATTCTCC 23183375
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823
| | |||||||||||||||||| |||||| || | || ||| |||||| |||
Sbjct 23183376 AACTGGCTGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCCTTCACCGCAGCTAAG 23183435
Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883
|| ||| || | || ||||||||| | ||| || | ||||||||| |||||||
Sbjct 23183436 AAGGTCTCCTCTGATTTCTTGTCCACGTGGATGCAGTAGAAATTCTGAGGCATGTAGATG 23183495
Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943
||||| || | ||| || | ||| || ||||| ||||| | ||| || || || || ||
Sbjct 23183496 GCCCTTAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATGGAATATGCAATT 23183555
Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003
|| || | | || || | ||| |||| | || | || || ||| ||||||| |||
Sbjct 23183556 GGGAAGTTCGCTTCTTCTCTACTGAGGGGTTCTGTAATATATTTGCGCATCTTGATGAAA 23183615
Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032
| || || | |||||||| |||||
Sbjct 23183616 GAGGTGCAGTCGCTGGTCATGTTTATATA 23183644
>seq189
Length=1716036
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/226 (71%), Gaps = 9/226 (4%)
Strand=Plus/Minus
Query 167880 AGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCC 167938
|| |||||| ||| ||| | |||||||||| | ||| |||| ||| ||||||||
Sbjct 669414 AGAGTTTGCTTGTA-GTCGATCACAGTTCCCAGGTATAGCACCTGGCAGATCACCTCC-- 669358
Query 167939 GTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCC 167998
|| || |||||| |||| || ||||| || | | ||||| || ||| ||| || ||
Sbjct 669357 -TTCCCCACTTGATTCTTGGGGTCTTTGACGCGGAGGATGCTGGTGACAGATGTGGTCCC 669299
Query 167999 ATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCC--TGCCACCTTCCAG 168056
||| |||| | | | || || ||||| ||||||| || |||| |||||||
Sbjct 669298 ATTTGCATGTGACTGACTCTCGGTACTATTCTCGATCCCTGTCCCAATGCC--CTTCCAG 669241
Query 168057 AATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| || || || || || || || || ||||||||||| |||||||
Sbjct 669240 GAGATCACGGGGGCTGGGCGAGCAGTGGCAGAGCAGGTGATATTTA 669195
>seq64
Length=13628464
Score = 86.0 bits (94), Expect = 7e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 176209 TGTTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCAT 176268
|||||||| | || | | | ||||| || | || |||| || |||| |||||| |
Sbjct 2970341 TGTTGTTTCTGTCAACTTCCTTCAGATACTTGGCAAGCTCACTGGGGGAGTTATAATCTT 2970400
Query 176269 TAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTA 176328
||||| || |||| | || ||| ||||| ||||| || |||| || || ||||| |
Sbjct 2970401 CCACATGAATGAATGAATCTGCTGGGATGTAATTTTCGTAGTTTTCCCTAGATGGTCCCA 2970460
Query 176329 AAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAG 176388
||| | || || | | || | || | ||||| |||||||| |||||| ||
Sbjct 2970461 GAACAACAGGCACAGAGCCAGCCAGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTT 2970520
Query 176389 TGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425
|||| || ||||||||||| | | ||| || || ||
Sbjct 2970521 TGTGGATGGAGTTTTCAAAGGAAAGATAAAATTTGCA 2970557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577140568314480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |