Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 131 3e-25 seq58 127 4e-24 seq7 123 4e-23 seq138 118 2e-21 seq93 118 2e-21 seq133 114 2e-20 seq4 111 3e-19 seq77 109 1e-18 seq32 109 1e-18 seq31 109 1e-18 seq44 104 4e-17 seq5 104 4e-17 >seq3 Length=68754498 Score = 131 bits (144), Expect = 3e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT-CTTTAGAAATATTATAGTCGG 193191 |||||| | | || ||||| ||||| | || | || |||| ||| |||| ||||| | Sbjct 46699777 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAA-TATTGTAGTCAG 46699719 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | || | || ||| || | ||| ||||| ||||| || | |||||| |||||||||| Sbjct 46699718 ACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 46699659 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | |||||||||||||| || || |||| |||| |||| ||||| || || | |||| Sbjct 46699658 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 46699599 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || || || ||||| ||||| || ||||| Sbjct 46699598 CCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 >seq58 Length=14941408 Score = 127 bits (140), Expect = 4e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT-CTTTAGAAATATTATAGTCGG 193191 |||||| | | || ||||| ||||| | || | || |||| ||| |||| ||||| | Sbjct 5525677 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAA-TATTGTAGTCAG 5525735 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | || || | ||| || | ||| ||||| ||||| || |||||||| |||||||||| Sbjct 5525736 ACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAG 5525795 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | |||||||| ||||| || || |||| |||| |||| ||||| || || | |||| Sbjct 5525796 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 5525855 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || || || ||||| || || || ||||| Sbjct 5525856 CCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq7 Length=50527172 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || ||||| ||||| | || | ||| || |||||| ||||| || Sbjct 41286041 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGA 41286100 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || | ||| ||||| ||||| || |||||||| ||||||||||| Sbjct 41286101 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 41286160 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| |||| |||| ||||| || || | ||| | Sbjct 41286161 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGC 41286220 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || ||||| || || || ||||| Sbjct 41286221 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq138 Length=5537732 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || ||||| ||||| | || | ||| || |||||| ||||| || Sbjct 893911 ACCACCACGAAGTCTCAGTACAAGATGAACGGTGGACTCCTTTTGAATATTGTAGTCAGA 893852 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || | ||| ||||| | ||| || |||||||| ||||||||||| Sbjct 893851 AAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGAGG 893792 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| |||| |||| ||||| || | | |||||| Sbjct 893791 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGCTCAAC 893732 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || | || || || ||||| ||||| || ||||| Sbjct 893731 CTCAAGCATAATGGTCGTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 893684 >seq93 Length=9247444 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | | || ||||| ||||| | || | ||| || |||||| ||||| | Sbjct 8914032 TACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAG 8914091 Query 193192 ATAACGTTCTAGAATCGTCT----AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 | || || | ||| || | ||| ||||| ||||| || |||||||| |||||| Sbjct 8914092 ACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCA 8914151 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 ||||| |||||||| ||||| || || |||| |||| |||| ||||| || || | Sbjct 8914152 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGT 8914211 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || ||||| || || || ||||| Sbjct 8914212 TCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq133 Length=5915255 Score = 114 bits (126), Expect = 2e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGT-TCTAGAATC 193207 ||||| ||||| | || | ||| || |||||| | ||| || || || | ||| Sbjct 1746496 AGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGACAAAGTATGCCCCATC 1746555 Query 193208 GTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 || | ||| ||||| ||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct 1746556 TTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1746615 Query 193268 TTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 || || |||| |||| |||| ||||| || || | ||||| || || || || || Sbjct 1746616 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGT 1746675 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || ||||| ||||| || ||||| Sbjct 1746676 CTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 >seq4 Length=53591480 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | | || || || ||||| | || | ||| || ||||| ||||| | Sbjct 13584080 TACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAG 13584021 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | || || | ||| || | ||| ||||| ||||| || | ||||| |||||||||| Sbjct 13584020 ACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAG 13583961 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | |||||||| ||||| || || |||| |||| |||| ||||| || || | |||| Sbjct 13583960 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAA 13583901 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || | || ||||| ||||| || ||||| Sbjct 13583900 CATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq77 Length=12540898 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || |||||||| ||||||||||| |||||||| ||| Sbjct 3217751 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 3217810 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| |||| |||| ||||| || || | ||||| || || || || Sbjct 3217811 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 3217870 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || || ||||| Sbjct 3217871 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3217905 >seq32 Length=28272660 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || |||||||| ||||||||||| |||||||| ||| Sbjct 1753122 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1753181 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| |||| |||| ||||| || || | ||||| || || || || Sbjct 1753182 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 1753241 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || || ||||| Sbjct 1753242 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1753276 >seq31 Length=29319519 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || ||||| ||| | | || | |||||| |||||| ||||| || Sbjct 3469713 ACCACCACAAAGTCTCAGTACAAGAAGAAGGGTGGACTCTTTTTGAATATTGTAGTCAGA 3469654 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || | | ||| || | ||| ||| | ||||| || |||||||| ||||||||||| Sbjct 3469653 CAAAGCACGCCCATCTTCCAGTTGCTTTGCAGCAAAGATCAATCTCTGCTGATCAGGAGG 3469594 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| |||| |||| ||||| || || | ||||| Sbjct 3469593 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 3469534 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || | || ||||| || || || ||||| Sbjct 3469533 CTTGAGCGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 3469486 >seq44 Length=18557718 Score = 104 bits (114), Expect = 4e-17 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || ||||| ||||| | || | ||| || ||| |||| ||||| || Sbjct 841671 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTGAA-TATTGTAGTCAGA 841729 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || ||| || | ||| ||||| ||||| || | |||||| ||||||||||| Sbjct 841730 CAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 841789 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| |||| |||| ||| || || | ||||| Sbjct 841790 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT--TCGAGTGTCCGAGGGTTCAAC 841847 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || || || || | || ||||| ||||| || ||||| Sbjct 841848 CTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895 >seq5 Length=53451024 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || || | | ||| || | ||| ||||| ||||| || | ||| Sbjct 40328408 ATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTC 40328349 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| |||||||| ||||| || || |||| |||| |||| ||||| Sbjct 40328348 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTG 40328289 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||| || || || || || || || || || ||||| | ||| || ||| Sbjct 40328288 TCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGGGTTTTCATAAAAATCTGC 40328229 Query 193359 AT 193360 || Sbjct 40328228 AT 40328227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899531844579360