Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 1e-24
seq58 127 4e-24
seq5 125 1e-23
seq7 122 2e-22
seq3 122 2e-22
seq93 118 2e-21
seq133 113 9e-20
seq89 105 1e-17
seq77 104 5e-17
seq44 104 5e-17
seq32 104 5e-17
seq37 100 6e-16
seq14 96.9 7e-15
seq2 86.0 1e-11
>seq4
Length=53591480
Score = 129 bits (142), Expect = 1e-24
Identities = 176/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 192291 ACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTT 192350
|||| || ||| || ||||||| | ||| | | || | ||| | || | ||| ||
Sbjct 13584097 ACTTCTTCCTTTTTTAGTACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTT 13584038
Query 192351 AGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA 192410
|||||| || ||||| || || || ||||| |||| ||| || ||||||||||| |
Sbjct 13584037 TTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAG 13583978
Query 192411 TCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 192470
||||| |||||||| || |||||||| ||||| || || || |||||||| |||
Sbjct 13583977 CCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTAT 13583918
Query 192471 AGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATAT 192530
|| ||||| | ||| || || || || ||||| || || | | ||||| | ||| ||
Sbjct 13583917 AGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAAT 13583858
Query 192531 CTGCAT 192536
||||||
Sbjct 13583857 CTGCAT 13583852
>seq58
Length=14941408
Score = 127 bits (140), Expect = 4e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367
|||||| | ||| | | ||| | ||| | || | || |||| || ||||| || ||||
Sbjct 5525677 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAG 5525735
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || || |||| |||| ||| || ||||||||||| |||||||| |||||||| |
Sbjct 5525736 ACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAG 5525795
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||||| || || | ||| |
Sbjct 5525796 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 5525855
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || || ||||| || || || | ||||| | || ||||||||
Sbjct 5525856 CCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904
>seq5
Length=53451024
Score = 125 bits (138), Expect = 1e-23
Identities = 143/191 (75%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405
||||| | |||||| || ||||| || | ||| |||| |||| ||| || |||||||||
Sbjct 40328416 TCTTTTG-GATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCAGCAAAG 40328358
Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
|| | ||||| |||||||| || |||||||| ||||| || || || ||||||||
Sbjct 40328357 ATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 40328298
Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525
||||| || || | ||| || || || || ||||| || || || | ||||| |||
Sbjct 40328297 TCTATAGTGTCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGGGTTTTCATA 40328238
Query 192526 AATATCTGCAT 192536
|| ||||||||
Sbjct 40328237 AAAATCTGCAT 40328227
>seq7
Length=50527172
Score = 122 bits (134), Expect = 2e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | | ||| | ||| | || | ||| ||| || ||||| || ||||
Sbjct 41286041 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAGTCAG 41286099
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || || |||| |||| ||| || ||||||||||| |||||||| |||||||| |
Sbjct 41286100 ACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAG 41286159
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||||| || || | |||
Sbjct 41286160 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAG 41286219
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || || ||||| || || || | ||||| | || ||||||||
Sbjct 41286220 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
>seq3
Length=68754498
Score = 122 bits (134), Expect = 2e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367
|||||| | ||| | | ||| | ||| | || | || |||| || ||||| || ||||
Sbjct 46699777 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAG 46699719
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || | | |||| |||| ||| || ||||||||||| | |||||| |||||||| |
Sbjct 46699718 ACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 46699659
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||||||||| || || || |||||||| ||||| || || | ||| |
Sbjct 46699658 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 46699599
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || || ||||| || || || | ||||| | ||| ||||||||
Sbjct 46699598 CCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550
>seq93
Length=9247444
Score = 118 bits (130), Expect = 2e-21
Identities = 170/237 (72%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363
|| ||||||| | ||| | | ||| | ||| | || | ||| ||| || ||||| ||
Sbjct 8914029 TAGTACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAG 8914087
Query 192364 TCAGATAATGTTCGTTCATCATCC----AATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419
||||| || || || |||| ||| | ||| || ||||||||||| |||||||| ||
Sbjct 8914088 TCAGACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTG 8914147
Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479
|||||| || |||||||| ||||| || || || |||||||| ||||| || ||
Sbjct 8914148 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 8914207
Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| ||| || || || || ||||| || || || | ||||| | || ||||||||
Sbjct 8914208 GGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
>seq133
Length=5915255
Score = 113 bits (124), Expect = 9e-20
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||| ||| || ||||||||||| |||||||| |||||||| || |||||||| |
Sbjct 1746552 CATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCT 1746611
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || |||||||| ||||| || || | ||| || || || || |
Sbjct 1746612 TATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGA 1746671
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|||| || ||| | | ||||| | ||| ||||||||
Sbjct 1746672 TGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708
>seq89
Length=9688204
Score = 105 bits (116), Expect = 1e-17
Identities = 152/213 (71%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| | | ||| | ||| | || | |||||| || || || || |||||
Sbjct 7024324 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTTTGA-ATGTTGTAGTCAGA 7024382
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || || |||| |||| ||| || ||||||||||| | ||||| | |||||| ||
Sbjct 7024383 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTAATCAGGAGG 7024442
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| ||||| || || | ||| ||
Sbjct 7024443 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 7024502
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521
|| || || ||||| || || || | |||||
Sbjct 7024503 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTT 7024535
>seq77
Length=12540898
Score = 104 bits (114), Expect = 5e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441
|| |||| ||| || ||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct 3217751 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 3217810
Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501
|| || || || |||||||| ||||| || || | ||| || || || || |||
Sbjct 3217811 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 3217870
Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || | ||||| | || ||||||||
Sbjct 3217871 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3217905
>seq44
Length=18557718
Score = 104 bits (114), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| | | ||| | ||| | || | ||| || || ||||| || |||||
Sbjct 841671 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTGA-ATATTGTAGTCAGA 841729
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || | |||| || | ||| || ||||||||||| | |||||| |||||||| ||
Sbjct 841730 CAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 841789
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| || || || || | ||| ||
Sbjct 841790 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT--TTCGAGTGTCCGAGGGTTCAAC 841847
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | || ||||| || || | | ||||| | ||| ||||||||
Sbjct 841848 CTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895
>seq32
Length=28272660
Score = 104 bits (114), Expect = 5e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441
|| |||| ||| || ||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct 1753122 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1753181
Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501
|| || || || |||||||| ||||| || || | ||| || || || || |||
Sbjct 1753182 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 1753241
Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || | ||||| | || ||||||||
Sbjct 1753242 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1753276
>seq37
Length=22002326
Score = 100 bits (110), Expect = 6e-16
Identities = 160/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | | ||| | ||| | || | ||| ||| || | ||| || ||||
Sbjct 17221346 ACCACCACGAAGTCTCAGTACAAGATGAACGGTGGACTCCTTTTGAAA-ATTGTAGTCAG 17221288
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | |||| | || ||| || ||||||||||| | ||||| | |||||| |
Sbjct 17221287 ACAAAGTGTGCCCATCTTACAGTTGCTTTCCAGCAAAGATCAGCCTCTGATAATCAGGAG 17221228
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||||||| || | | ||| |
Sbjct 17221227 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGAGTCCCAGGGTTCAA 17221168
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
| || || | ||||| || ||||| | ||||| | || ||||||
Sbjct 17221167 CCTCAAGCATGATGGTCTTCCCAGTAAGGGTTTTCGTGAAAATCTGC 17221121
>seq14
Length=40345996
Score = 96.9 bits (106), Expect = 7e-15
Identities = 159/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| | | ||| | ||| | || | ||| || || || || |||||
Sbjct 27521055 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 27520996
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || || |||| | || ||| || ||||||||||| | ||||| || ||||| ||
Sbjct 27520995 CAAAGTACGCCCATCTTGCACTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 27520936
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| | ||| || || | ||| ||
Sbjct 27520935 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTCTAGTGTCCGAGGGTTCAAC 27520876
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || || | ||| | ||| || || ||||||||
Sbjct 27520875 CTCGAGCGTGATGGTCTTCCCCG-TAAGGGTTTCATGAAAATCTGCAT 27520829
>seq2
Length=75421681
Score = 86.0 bits (94), Expect = 1e-11
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | | || | ||| | ||| | ||| ||| || || || || ||||
Sbjct 14371022 ACCACCACGAAGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 14371080
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || | || |||| ||| | || |||||||||||||| | ||||| |||| ||| |
Sbjct 14371081 ACAAAGGACGCCCATCTTCCTAGTGCTTACCAGCAAAGATCAGCCTCTGCTGATTAGGGG 14371140
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||| ||| ||||| || || || |||||||| | ||| ||||| | ||
Sbjct 14371141 GAATTTCTTTCTTATCCTGGATCTTGGCCTTTACATTTTCTGTAGTGTCTGAGGGTTTAG 14371200
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || || ||||| || || | | ||||| | ||| ||||||||
Sbjct 14371201 CCTCGAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 14371249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984342536442300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |