Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 129 1e-24 seq58 127 4e-24 seq5 125 1e-23 seq7 122 2e-22 seq3 122 2e-22 seq93 118 2e-21 seq133 113 9e-20 seq89 105 1e-17 seq77 104 5e-17 seq44 104 5e-17 seq32 104 5e-17 seq37 100 6e-16 seq14 96.9 7e-15 seq2 86.0 1e-11 >seq4 Length=53591480 Score = 129 bits (142), Expect = 1e-24 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 192291 ACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTT 192350 |||| || ||| || ||||||| | ||| | | || | ||| | || | ||| || Sbjct 13584097 ACTTCTTCCTTTTTTAGTACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTT 13584038 Query 192351 AGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA 192410 |||||| || ||||| || || || ||||| |||| ||| || ||||||||||| | Sbjct 13584037 TTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAG 13583978 Query 192411 TCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 192470 ||||| |||||||| || |||||||| ||||| || || || |||||||| ||| Sbjct 13583977 CCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTAT 13583918 Query 192471 AGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATAT 192530 || ||||| | ||| || || || || ||||| || || | | ||||| | ||| || Sbjct 13583917 AGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAAT 13583858 Query 192531 CTGCAT 192536 |||||| Sbjct 13583857 CTGCAT 13583852 >seq58 Length=14941408 Score = 127 bits (140), Expect = 4e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 |||||| | ||| | | ||| | ||| | || | || |||| || ||||| || |||| Sbjct 5525677 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAG 5525735 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| ||| || ||||||||||| |||||||| |||||||| | Sbjct 5525736 ACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAG 5525795 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 5525796 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 5525855 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| || || || | ||||| | || |||||||| Sbjct 5525856 CCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq5 Length=53451024 Score = 125 bits (138), Expect = 1e-23 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| | |||||| || ||||| || | ||| |||| |||| ||| || ||||||||| Sbjct 40328416 TCTTTTG-GATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCAGCAAAG 40328358 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | ||||| |||||||| || |||||||| ||||| || || || |||||||| Sbjct 40328357 ATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 40328298 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 ||||| || || | ||| || || || || ||||| || || || | ||||| ||| Sbjct 40328297 TCTATAGTGTCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGGGTTTTCATA 40328238 Query 192526 AATATCTGCAT 192536 || |||||||| Sbjct 40328237 AAAATCTGCAT 40328227 >seq7 Length=50527172 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | | ||| | ||| | || | ||| ||| || ||||| || |||| Sbjct 41286041 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAGTCAG 41286099 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| ||| || ||||||||||| |||||||| |||||||| | Sbjct 41286100 ACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAG 41286159 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| Sbjct 41286160 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAG 41286219 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| || || || | ||||| | || |||||||| Sbjct 41286220 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq3 Length=68754498 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 |||||| | ||| | | ||| | ||| | || | || |||| || ||||| || |||| Sbjct 46699777 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGA-ATATTGTAGTCAG 46699719 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | | |||| |||| ||| || ||||||||||| | |||||| |||||||| | Sbjct 46699718 ACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 46699659 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||||||||| || || || |||||||| ||||| || || | ||| | Sbjct 46699658 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 46699599 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| || || || | ||||| | ||| |||||||| Sbjct 46699598 CCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 >seq93 Length=9247444 Score = 118 bits (130), Expect = 2e-21 Identities = 170/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 || ||||||| | ||| | | ||| | ||| | || | ||| ||| || ||||| || Sbjct 8914029 TAGTACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTAG 8914087 Query 192364 TCAGATAATGTTCGTTCATCATCC----AATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 ||||| || || || |||| ||| | ||| || ||||||||||| |||||||| || Sbjct 8914088 TCAGACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTG 8914147 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 |||||| || |||||||| ||||| || || || |||||||| ||||| || || Sbjct 8914148 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 8914207 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| || || || || ||||| || || || | ||||| | || |||||||| Sbjct 8914208 GGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq133 Length=5915255 Score = 113 bits (124), Expect = 9e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| |||||||| |||||||| || |||||||| | Sbjct 1746552 CATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCT 1746611 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| ||||| || || | ||| || || || || | Sbjct 1746612 TATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGA 1746671 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||| | | ||||| | ||| |||||||| Sbjct 1746672 TGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 >seq89 Length=9688204 Score = 105 bits (116), Expect = 1e-17 Identities = 152/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | | ||| | ||| | || | |||||| || || || || ||||| Sbjct 7024324 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTTTGA-ATGTTGTAGTCAGA 7024382 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||| ||| || ||||||||||| | ||||| | |||||| || Sbjct 7024383 CAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTAATCAGGAGG 7024442 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||||| || || | ||| || Sbjct 7024443 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 7024502 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 || || || ||||| || || || | ||||| Sbjct 7024503 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTT 7024535 >seq77 Length=12540898 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||| ||| || ||||||||||| |||||||| |||||||| || |||||||| ||| Sbjct 3217751 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 3217810 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || |||||||| ||||| || || | ||| || || || || ||| Sbjct 3217811 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 3217870 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || | ||||| | || |||||||| Sbjct 3217871 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3217905 >seq44 Length=18557718 Score = 104 bits (114), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | | ||| | ||| | || | ||| || || ||||| || ||||| Sbjct 841671 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTGA-ATATTGTAGTCAGA 841729 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | |||| || | ||| || ||||||||||| | |||||| |||||||| || Sbjct 841730 CAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 841789 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| || || || || | ||| || Sbjct 841790 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT--TTCGAGTGTCCGAGGGTTCAAC 841847 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| || || | | ||||| | ||| |||||||| Sbjct 841848 CTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895 >seq32 Length=28272660 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||| ||| || ||||||||||| |||||||| |||||||| || |||||||| ||| Sbjct 1753122 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1753181 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || |||||||| ||||| || || | ||| || || || || ||| Sbjct 1753182 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 1753241 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || | ||||| | || |||||||| Sbjct 1753242 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1753276 >seq37 Length=22002326 Score = 100 bits (110), Expect = 6e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | | ||| | ||| | || | ||| ||| || | ||| || |||| Sbjct 17221346 ACCACCACGAAGTCTCAGTACAAGATGAACGGTGGACTCCTTTTGAAA-ATTGTAGTCAG 17221288 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | |||| | || ||| || ||||||||||| | ||||| | |||||| | Sbjct 17221287 ACAAAGTGTGCCCATCTTACAGTTGCTTTCCAGCAAAGATCAGCCTCTGATAATCAGGAG 17221228 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||||| || | | ||| | Sbjct 17221227 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGAGTCCCAGGGTTCAA 17221168 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 | || || | ||||| || ||||| | ||||| | || |||||| Sbjct 17221167 CCTCAAGCATGATGGTCTTCCCAGTAAGGGTTTTCGTGAAAATCTGC 17221121 >seq14 Length=40345996 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | | ||| | ||| | || | ||| || || || || ||||| Sbjct 27521055 ACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 27520996 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| | || ||| || ||||||||||| | ||||| || ||||| || Sbjct 27520995 CAAAGTACGCCCATCTTGCACTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 27520936 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| | ||| || || | ||| || Sbjct 27520935 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTCTAGTGTCCGAGGGTTCAAC 27520876 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || | ||| | ||| || || |||||||| Sbjct 27520875 CTCGAGCGTGATGGTCTTCCCCG-TAAGGGTTTCATGAAAATCTGCAT 27520829 >seq2 Length=75421681 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | | || | ||| | ||| | ||| ||| || || || || |||| Sbjct 14371022 ACCACCACGAAGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 14371080 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | || |||| ||| | || |||||||||||||| | ||||| |||| ||| | Sbjct 14371081 ACAAAGGACGCCCATCTTCCTAGTGCTTACCAGCAAAGATCAGCCTCTGCTGATTAGGGG 14371140 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||| ||| ||||| || || || |||||||| | ||| ||||| | || Sbjct 14371141 GAATTTCTTTCTTATCCTGGATCTTGGCCTTTACATTTTCTGTAGTGTCTGAGGGTTTAG 14371200 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| || || | | ||||| | ||| |||||||| Sbjct 14371201 CCTCGAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 14371249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984342536442300