Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 120 5e-22 >seq3 Length=68754498 Score = 120 bits (132), Expect = 5e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT-CTTTAGAAATAT 171891 |||| || |||||| | ||||| | ||| | ||| | || | || |||| ||| ||| Sbjct 46699786 TTTCTTAGCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAA-TAT 46699728 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | || || || ||||| | | || |||| ||| || |||||||| || | |||||| | Sbjct 46699727 TGTAGTCAGACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCT 46699668 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | ||||| || |||||||||||||| || || || |||||||| |||||| || | Sbjct 46699667 GATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCG 46699608 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | | ||| || || || || ||||| || || || | ||||| | || |||||||| Sbjct 46699607 AGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905012697848400