Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq57 93.3 1e-13 >seq57 Length=15126812 Score = 93.3 bits (102), Expect = 1e-13 Identities = 199/291 (68%), Gaps = 16/291 (5%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 |||||||| || || || | | | || || ||||||||||| || ||| || || Sbjct 10749436 TTTGTTATCTTTCCTATGCAATAGCATGATATCTGGCAGATGTACAAGAAA--GCCAGGG 10749493 Query 133136 --TTATTTTGGACTTCAACTGAAGT---AGATTTATCCAAAGACC--CAGCCCACTGGGA 133188 | || ||||| | |||| || |||| | ||||| ||| |||| ||||||| Sbjct 10749494 CCTCCTTCTGGAC---AGCTGAGGTGGTAGATCTTTCCAAGGACGTTCAGC--ACTGGGA 10749548 Query 133189 AGCCCTTACTGGGGATGAAAAACAT--TTTATTTCTATGATTTTAGCGTTTTTTGCTGCG 133246 |||||| | || |||||| || ||||| ||| | || | || || |||||||| Sbjct 10749549 AGCCCTGAAGCCTGAAGAAAAAGATACTTTATATCTCTCGTTCTGGCTTTCTTTGCTGCC 10749608 Query 133247 AGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306 ||||||||||| || |||||| | | || |||| |||||||||| | | Sbjct 10749609 AGTGATGGTATAGTAAATGAAAACATGGTGGAGCGATTTAGCCAAGAAGTTCAAATTACA 10749668 Query 133307 GAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357 |||||||| || |||||| | || ||||| ||||| || || |||||| Sbjct 10749669 GAAGCCCGCTGTTTCTATGGGTTCCAAATTGCCATGGATAACATACATTCT 10749719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471612089188626