Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq57 93.3 1e-13
>seq57
Length=15126812
Score = 93.3 bits (102), Expect = 1e-13
Identities = 199/291 (68%), Gaps = 16/291 (5%)
Strand=Plus/Plus
Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135
|||||||| || || || | | | || || ||||||||||| || ||| || ||
Sbjct 10749436 TTTGTTATCTTTCCTATGCAATAGCATGATATCTGGCAGATGTACAAGAAA--GCCAGGG 10749493
Query 133136 --TTATTTTGGACTTCAACTGAAGT---AGATTTATCCAAAGACC--CAGCCCACTGGGA 133188
| || ||||| | |||| || |||| | ||||| ||| |||| |||||||
Sbjct 10749494 CCTCCTTCTGGAC---AGCTGAGGTGGTAGATCTTTCCAAGGACGTTCAGC--ACTGGGA 10749548
Query 133189 AGCCCTTACTGGGGATGAAAAACAT--TTTATTTCTATGATTTTAGCGTTTTTTGCTGCG 133246
|||||| | || |||||| || ||||| ||| | || | || || ||||||||
Sbjct 10749549 AGCCCTGAAGCCTGAAGAAAAAGATACTTTATATCTCTCGTTCTGGCTTTCTTTGCTGCC 10749608
Query 133247 AGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306
||||||||||| || |||||| | | || |||| |||||||||| | |
Sbjct 10749609 AGTGATGGTATAGTAAATGAAAACATGGTGGAGCGATTTAGCCAAGAAGTTCAAATTACA 10749668
Query 133307 GAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357
|||||||| || |||||| | || ||||| ||||| || || ||||||
Sbjct 10749669 GAAGCCCGCTGTTTCTATGGGTTCCAAATTGCCATGGATAACATACATTCT 10749719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471612089188626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |