Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq154 170 2e-36 seq140 168 8e-36 seq29 161 1e-33 seq23 161 1e-33 seq2 109 7e-18 seq61 100 3e-15 seq15 86.0 8e-11 >seq154 Length=3898418 Score = 170 bits (188), Expect = 2e-36 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2810156 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2810097 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2810096 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2810037 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| |||| | |||| ||||||||| |||||||| Sbjct 2810036 TGTCGTTCACGAACGAGTTCATGATGAACATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2809977 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2809976 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2809940 Score = 167 bits (184), Expect = 3e-35 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 3573950 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 3574009 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 3574010 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 3574069 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 3574070 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 3574129 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 3574130 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 3574166 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2836621 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2836562 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2836561 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2836502 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | ||| ||||||||| |||||||| Sbjct 2836501 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGT 2836442 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2836441 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2836405 Score = 145 bits (160), Expect = 9e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 3652547 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 3652606 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 3652607 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 3652666 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||| ||| | |||||||| Sbjct 3652667 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGGTGCTCGTGTCGGGGT 3652726 Query 1254523 GCACCTGCTTGAGCACCT 1254540 |||||||||| ||||||| Sbjct 3652727 GCACCTGCTTCAGCACCT 3652744 >seq140 Length=5458049 Score = 168 bits (186), Expect = 8e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 5337084 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 5337025 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 5337024 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 5336965 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 5336964 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 5336905 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||||||||| Sbjct 5336904 GCACCTGCTTCAGCACCTTGTAGATG 5336879 >seq29 Length=29433701 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 14431782 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 14431841 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 14431842 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 14431901 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 14431902 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 14431961 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 14431962 GCACCTGCTTCAGCACCTTGTA 14431983 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| |||||||| || ||||||||||||| ||| | |||| |||| Sbjct 14508669 CGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGA 14508728 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| |||||||||||||||||| ||||||||||| | | || |||||| Sbjct 14508729 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 14508780 Score = 93.3 bits (102), Expect = 5e-13 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || || ||||| | || || || || |||||| | ||||||||| | |||| || || Sbjct 25040764 ACACTTTTTGAACTTATTCTGGCTGCAAACTACTTAGACATCAAGGGTTTGCTGGACGTT 25040823 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| |||| ||||| ||||| ||||| ||| | || ||||||||| |||||||| Sbjct 25040824 ACATGCAAGCCTGTTGCCAATATGATTAAGGGGAAGACTCCTGAGGAGATC-GCAAGACC 25040882 Query 1592285 TTTAACATCAA 1592295 || || ||||| Sbjct 25040883 TTCAATATCAA 25040893 >seq23 Length=32015139 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 1901358 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 1901299 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 1901298 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 1901239 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||| | Sbjct 1901238 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGAT 1901179 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1901178 GCACCTGCTTCAGCACCTTGTA 1901157 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 1907670 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 1907729 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 1907730 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 1907789 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||| | Sbjct 1907790 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGAT 1907849 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1907850 GCACCTGCTTCAGCACCTTGTA 1907871 >seq2 Length=75421681 Score = 109 bits (120), Expect = 7e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || || ||| | ||||||| | || || | || || || | Sbjct 59750437 AGAAGCGGACTGATGATATCCCTGTGTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAA 59750496 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || ||||| | || || || || |||||| | ||||||||| | |||| ||| || Sbjct 59750497 CACTTTTTGAACTTATTCTGGCTGCAAACTACTTAGACATCAAGGGTTTGCTGGATGTTA 59750556 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| |||| ||||| ||||| ||||| ||| | || ||||||||||||||||||| Sbjct 59750557 CATGCAAGACTGTTGCCAATATGATTAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCT 59750616 Query 1592286 TTAACATCAA 1592295 | || ||||| Sbjct 59750617 TCAATATCAA 59750626 Score = 87.8 bits (96), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1592200 CGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAA 1592259 |||||||||| | |||| || || |||||| |||| ||||||||||| ||||| || Sbjct 21649911 CGACATCAAGGGTTTGCTGGACATTACATGCAAGACTGTTGCCAACATGATTAAGGGGAA 21649970 Query 1592260 GTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 | | || |||||||||||||||||||| || || || Sbjct 21649971 GACTCCTGAGGAGATCCGCAAGACCTTCAATATAAA 21650006 >seq61 Length=14469262 Score = 100 bits (110), Expect = 3e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || |||||| | ||||||| | || || | || || || | Sbjct 12103332 AGAAGCGGACGGATGACATCCCTGTGTGGGACCAAGAATTCCTGAAAGTTGACCATGGAA 12103273 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || ||||| | || || || || |||||| | |||||||| | |||| || || Sbjct 12103272 CACTTTTTGAACTTATTCTGGCTGCAAACTACTTAGACATCAAAGGTTTGCTGGACATTA 12103213 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| |||| ||||| ||||| ||||| ||| | || ||||||||||||||||||| Sbjct 12103212 CATGCAAAACTGTTGCCAATATGATTAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCT 12103153 Query 1592286 TTAACATCAA 1592295 | || ||||| Sbjct 12103152 TCAATATCAA 12103143 >seq15 Length=38784467 Score = 86.0 bits (94), Expect = 8e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || |||||| | | ||||| | || || | || || || | Sbjct 9015876 AGAAGCGGACGGATGACATCCCTGTGCGGGACCAAGAATTCCTGAAAGTTGACCAAGGAA 9015817 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || ||||| | || || || || |||||| | ||||||| | |||| | || Sbjct 9015816 CACTTTTTGAACTTATTCTGGCTGCAAACTACTTAGACATCAGAGTTTTGCTGTACATTC 9015757 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| |||| |||| ||||| ||||| ||| | || ||||||||||||||||||| Sbjct 9015756 CATGCAAGACTGTTGCCAGTATGATTAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCT 9015697 Query 1592286 TTAACATCAA 1592295 | || ||||| Sbjct 9015696 TCAATATCAA 9015687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106244859084666