Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq86 87.8 1e-12 >seq86 Length=10307599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 215/324 (66%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || || ||||| || ||||| | ||||| || ||||| || || Sbjct 2920943 AGATCTGTTTCAGGATTCTCACACTCAGGACAGAGAACAAATTTTTTAATGAACCCCTCC 2920884 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || ||| || | | || | || || || || ||||| ||| | | || || || Sbjct 2920883 AACATGTCTTGCAGCCTATTTGCCTCATGAGATCCATTGACAATGGAAGGGTCATTCTTA 2920824 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 ||| | ||| || | || |||||||| || || || || || || || || | | Sbjct 2920823 ACATCAAACTGGGTCTATGCTCCCAGCTCCCAACCAAAATATTTGGTGGGATACGTTGGA 2920764 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || || |||| |||| || || ||||||||| || || |||||||| || || Sbjct 2920763 GGCCGATAAAGCACCTTTGCAGCATCAACCATGTTGACTATAACTGTCTTGATTCCATTT 2920704 Query 34555 CCCTTTCCTTCGACCTTGGCG--CAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 || || || || ||| | || |||| || ||||||||||| | |||||| || | Sbjct 2920703 CCTTTGCCCTCAACCATCGCAATCAGA--CGGGGCATTTTGTAAGGATAGAACTGTTCTG 2920646 Query 34613 CCACATTGCGGTTAACGTTCACAG 34636 || ||| ||| ||||| |||| Sbjct 2920645 ATACGCTGCAGTTGACGTTGACAG 2920622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412786766636714