Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq86 87.8 1e-12
>seq86
Length=10307599
Score = 87.8 bits (96), Expect = 1e-12
Identities = 215/324 (66%), Gaps = 4/324 (1%)
Strand=Plus/Minus
Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374
|| || || || || || ||||| || ||||| | ||||| || ||||| || ||
Sbjct 2920943 AGATCTGTTTCAGGATTCTCACACTCAGGACAGAGAACAAATTTTTTAATGAACCCCTCC 2920884
Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434
| || ||| || | | || | || || || || ||||| ||| | | || || ||
Sbjct 2920883 AACATGTCTTGCAGCCTATTTGCCTCATGAGATCCATTGACAATGGAAGGGTCATTCTTA 2920824
Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494
||| | ||| || | || |||||||| || || || || || || || || | |
Sbjct 2920823 ACATCAAACTGGGTCTATGCTCCCAGCTCCCAACCAAAATATTTGGTGGGATACGTTGGA 2920764
Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554
|| || |||| |||| || || ||||||||| || || |||||||| || ||
Sbjct 2920763 GGCCGATAAAGCACCTTTGCAGCATCAACCATGTTGACTATAACTGTCTTGATTCCATTT 2920704
Query 34555 CCCTTTCCTTCGACCTTGGCG--CAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612
|| || || || ||| | || |||| || ||||||||||| | |||||| || |
Sbjct 2920703 CCTTTGCCCTCAACCATCGCAATCAGA--CGGGGCATTTTGTAAGGATAGAACTGTTCTG 2920646
Query 34613 CCACATTGCGGTTAACGTTCACAG 34636
|| ||| ||| ||||| ||||
Sbjct 2920645 ATACGCTGCAGTTGACGTTGACAG 2920622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412786766636714
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |