Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23 219 7e-51 seq154 215 8e-50 seq140 205 1e-46 seq29 205 1e-46 >seq23 Length=32015139 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1901397 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1901338 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 1901337 GCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 1901278 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| |||||||| || |||||||||| Sbjct 1901277 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 1901218 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| ||||||||||| |||||||||| Sbjct 1901217 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACCTTGT 1901158 Query 1485710 AAAC 1485713 | || Sbjct 1901157 ACAC 1901154 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1907631 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1907690 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 1907691 GCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 1907750 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| |||||||| || |||||||||| Sbjct 1907751 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 1907810 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| ||||||||||| |||||||||| Sbjct 1907811 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACCTTGT 1907870 Query 1485710 AAAC 1485713 | || Sbjct 1907871 ACAC 1907874 >seq154 Length=3898418 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 2810195 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2810136 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 2810135 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 2810076 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| |||||||| || |||||||||| Sbjct 2810075 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 2810016 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| |||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 2810015 TGATGAACATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 2809956 Query 1485710 AAAC 1485713 | || Sbjct 2809955 ACAC 2809952 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 3573911 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 3573970 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 3573971 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 3574030 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| |||||||| || |||||||||| Sbjct 3574031 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 3574090 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 3574091 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 3574150 Query 1485710 AAAC 1485713 | || Sbjct 3574151 ACAC 3574154 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 2836660 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2836601 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 2836600 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 2836541 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| |||||||| || |||||||||| Sbjct 2836540 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 2836481 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| |||||||||||||||||| |||||||||| Sbjct 2836480 TGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 2836421 Query 1485710 AAAC 1485713 | || Sbjct 2836420 ACAC 2836417 Score = 194 bits (214), Expect = 3e-43 Identities = 185/237 (78%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 3652508 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 3652567 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 3652568 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 3652627 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| |||||||| || |||||||||| Sbjct 3652628 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 3652687 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||| ||| | ||| ||| ||| | |||||||||||||||||| ||||||| Sbjct 3652688 TGATGCCCATGGCCTTGGACGAGGTGCTCGTGTCGGGGTGCACCTGCTTCAGCACCT 3652744 Score = 122 bits (134), Expect = 1e-21 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 3688919 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 3688860 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 3688859 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 3688800 Query 1485590 GCGCCAGGCG 1485599 |||||||||| Sbjct 3688799 GCGCCAGGCG 3688790 Score = 120 bits (132), Expect = 5e-21 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 2989846 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2989787 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 2989786 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 2989727 Query 1485590 GCGCCAGGC 1485598 ||||||||| Sbjct 2989726 GCGCCAGGC 2989718 Score = 109 bits (120), Expect = 9e-18 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 3622403 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 3622462 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | |||||||||||| ||||||||||| Sbjct 3622463 GCAGCAGGCGCACGGCCGTCTGGATCTC 3622490 >seq140 Length=5458049 Score = 205 bits (226), Expect = 1e-46 Identities = 190/241 (79%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 5337123 TGTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 5337064 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 5337063 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 5337004 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| |||||||| || |||||||||| Sbjct 5337003 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 5336944 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 5336943 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 5336884 Query 1485710 A 1485710 | Sbjct 5336883 A 5336883 >seq29 Length=29433701 Score = 205 bits (226), Expect = 1e-46 Identities = 191/243 (79%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 || |||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 14431744 GTCCTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCAG 14431803 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 | |||||||||||| ||||||||||| || | ||| || ||||||||| | | Sbjct 14431804 CAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGTG 14431863 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||||||| |||||| ||||||| |||| |||||||| || ||||||||||| Sbjct 14431864 CGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCAT 14431923 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 14431924 GATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 14431983 Query 1485711 AAC 1485713 || Sbjct 14431984 CAC 14431986 Score = 113 bits (124), Expect = 7e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 14489109 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 14489050 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 | |||||||||||| ||||||||||| || | ||| || ||||||||| Sbjct 14489049 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTT 14488995 Score = 100 bits (110), Expect = 5e-15 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| |||||||| || |||||||||||||| ||| | ||| |||| Sbjct 14508669 CGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGA 14508728 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| |||||||||||||||||| ||||||||||| || Sbjct 14508729 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 14508768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915087130034222