Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq116 143 2e-29 seq4 109 4e-19 seq138 100 2e-16 seq7 100 2e-16 seq58 95.1 8e-15 seq3 95.1 8e-15 seq14 91.5 1e-13 seq5 91.5 1e-13 seq57 89.7 3e-13 seq93 87.8 1e-12 seq133 84.2 1e-11 >seq116 Length=7179089 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || | | |||| |||| Sbjct 4848379 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 4848438 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| |||||||| | |||||||| | || | ||||| ||||| Sbjct 4848439 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4848498 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 4848499 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4848558 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||||||||| Sbjct 4848559 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq4 Length=53591480 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| |||||| || || || ||||| || | | |||||| Sbjct 13584066 CTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCA 13584007 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| || |||||||| | ||||| || | || | || ||||| Sbjct 13584006 TCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 13583947 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || ||||||| || ||| Sbjct 13583946 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATG 13583887 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||| | ||||| || ||||| |||||||| Sbjct 13583886 GTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq138 Length=5537732 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| |||||| ||||| || ||||| || | | ||| || Sbjct 893898 CTCAGTACAAGATGAACGGTGGACTCCTTTTGAATATTGTAGTCAGAAAAAGTACGCCCA 893839 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| | ||||||| || ||||| || | || | || ||||| Sbjct 893838 TCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 893779 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || ||| || |||| | ||| Sbjct 893778 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAATG 893719 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| | ||||| ||||| || ||||| |||||||| Sbjct 893718 GTCGTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 893684 >seq7 Length=50527172 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| |||||| ||||| || ||||| || | | ||| || Sbjct 41286054 CTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCA 41286113 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| || ||||||| || ||||| || | || | || ||||| Sbjct 41286114 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 41286173 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || | || | ||| ||| Sbjct 41286174 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATG 41286233 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || || |||||||| Sbjct 41286234 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq58 Length=14941408 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| || ||| ||||| || ||||| || | | ||| || Sbjct 5525690 CTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCA 5525749 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| || ||||||| || ||||| || | || | || ||||| Sbjct 5525750 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 5525809 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || || | || ||| Sbjct 5525810 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 5525869 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || || |||||||| Sbjct 5525870 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq3 Length=68754498 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| || ||| ||||| || ||||| || | | | || Sbjct 46699764 CTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCA 46699705 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| || |||||||||| ||||| || | || | || || || Sbjct 46699704 TCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTA 46699645 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || |||| || ||| Sbjct 46699644 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATG 46699585 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || ||||| |||||||| Sbjct 46699584 GTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 >seq14 Length=40345996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| ||||||||||||||| ||||| || | | ||| || Sbjct 27521042 CTCAGTACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGCCCA 27520983 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || | || ||||||||| || |||||||| | |||||||| | || | || ||||| Sbjct 27520982 TCTTGCACTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTA 27520923 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | || | | || || || || || | || ||| Sbjct 27520922 TCCTGGATCTTGGCCTTTACATTTTCTCTAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 27520863 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || | || |||||||| Sbjct 27520862 GTCTTCCCCGTAAGGGT-TTCATGAAAATCTGCAT 27520829 >seq5 Length=53451024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || | || |||| || ||| || || || ||||| || | |||| || Sbjct 40328441 CTCAGCACAAGATAAAGGGTGGACTTCTTTTGGATATTGTAGTCAGACAAATTGCGTCCA 40328382 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| || |||||||| | ||||| || | || | || ||||| Sbjct 40328381 TCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 40328322 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || |||| || ||| Sbjct 40328321 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGTGTGATG 40328262 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || | ||| |||||||| Sbjct 40328261 GTCTTCCCCGTAAGGGTTTTCATAAAAATCTGCAT 40328227 >seq57 Length=15126812 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||| ||||| ||||| || || || || |||| |||| Sbjct 1409816 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1409757 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||| || || |||||||| | || | || |||||||| Sbjct 1409756 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 1409698 >seq93 Length=9247444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || || |||| |||| |||||| ||||| || ||||| || | | ||| || Sbjct 8914046 CTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCA 8914105 Query 34823 TCGTCC----AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTC 34878 || ||| ||||||||||| || ||||||| || ||||| || | || | || || Sbjct 8914106 TCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTC 8914165 Query 34879 CTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGT 34938 ||| || | || || || || | |||| | || || || || || | || Sbjct 8914166 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 8914225 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| ||||| || || || |||||||| Sbjct 8914226 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq133 Length=5915255 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATA--GGCTGCGCT 34820 ||||| || || |||| |||| |||||| ||||| || | ||| || | | ||| | Sbjct 1746493 CTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGACAAAGTATGCCC- 1746551 Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| |||||||||||||| || ||||||| || ||||| || | || | || |||| Sbjct 1746552 CATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCT 1746611 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || | || || || || | |||| | || || || || || | || | Sbjct 1746612 TATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGA 1746671 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || | ||||| || ||||| |||||||| Sbjct 1746672 TGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325649541685862