Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2428 89.7 5e-13 >seq2428 Length=4337 Score = 89.7 bits (98), Expect = 5e-13 Identities = 239/364 (66%), Gaps = 1/364 (0%) Strand=Plus/Minus Query 20334 CTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTGCAAAATC 20393 ||||| || || || || |||||||| || ||| || || ||||| |||| | || Sbjct 4337 CTGCCATTGGGACAGGATTCGACTGTGCAAGCAAGACTGAAATACAGTTGGTGCAGAGTC 4278 Query 20394 TGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCGCATATAA 20453 | || || | |||| ||||| | | ||| ||||| | ||| || || || || | Sbjct 4277 TTGGGGTACCTCCAGAGAGGATTATCTATGCAAATCCCT-TAAACAAGTGTCTCAAATTA 4219 Query 20454 CGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAAGAGCTTACCA 20513 |||||| || |||||||| | ||||||||||||||||||||| ||| | | | Sbjct 4218 AGTATGCTGCCAGTACTGGAGTCCAGATGATGACTTTTGATAGTGAAGTTGAGTTGATGA 4159 Query 20514 AAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTGGATGACTCTA 20573 || | | | | |||||| | || | |||| |||| ||| ||||| || | Sbjct 4158 AAGTCGCTAGAGTGCACCCAAAGGCATGGTTGGTTTTGAGAATTGCCACTGATGATTCCA 4099 Query 20574 ACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGCCAACGCCTGC 20633 | ||| | | || ||||| || ||||| || | | || ||||| || || Sbjct 4098 AAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAACCAGCAGACTTCTCT 4039 Query 20634 TAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCACGTGGGCAGTG 20693 | ||| ||| ||| | || | || || || || ||||||||||| || || |||| Sbjct 4038 TGGAACGGGCAAAAGAGCTAAATATTGATGTCATTGGTGTCAGCTTCCATGTAGGGAGTG 3979 Query 20694 GCTG 20697 |||| Sbjct 3978 GCTG 3975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463482453500640