Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq2428 89.7 5e-13
>seq2428
Length=4337
Score = 89.7 bits (98), Expect = 5e-13
Identities = 239/364 (66%), Gaps = 1/364 (0%)
Strand=Plus/Minus
Query 20334 CTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTGCAAAATC 20393
||||| || || || || |||||||| || ||| || || ||||| |||| | ||
Sbjct 4337 CTGCCATTGGGACAGGATTCGACTGTGCAAGCAAGACTGAAATACAGTTGGTGCAGAGTC 4278
Query 20394 TGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCGCATATAA 20453
| || || | |||| ||||| | | ||| ||||| | ||| || || || || |
Sbjct 4277 TTGGGGTACCTCCAGAGAGGATTATCTATGCAAATCCCT-TAAACAAGTGTCTCAAATTA 4219
Query 20454 CGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAAGAGCTTACCA 20513
|||||| || |||||||| | ||||||||||||||||||||| ||| | | |
Sbjct 4218 AGTATGCTGCCAGTACTGGAGTCCAGATGATGACTTTTGATAGTGAAGTTGAGTTGATGA 4159
Query 20514 AAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTGGATGACTCTA 20573
|| | | | | |||||| | || | |||| |||| ||| ||||| || |
Sbjct 4158 AAGTCGCTAGAGTGCACCCAAAGGCATGGTTGGTTTTGAGAATTGCCACTGATGATTCCA 4099
Query 20574 ACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGCCAACGCCTGC 20633
| ||| | | || ||||| || ||||| || | | || ||||| || ||
Sbjct 4098 AAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAACCAGCAGACTTCTCT 4039
Query 20634 TAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCACGTGGGCAGTG 20693
| ||| ||| ||| | || | || || || || ||||||||||| || || ||||
Sbjct 4038 TGGAACGGGCAAAAGAGCTAAATATTGATGTCATTGGTGTCAGCTTCCATGTAGGGAGTG 3979
Query 20694 GCTG 20697
||||
Sbjct 3978 GCTG 3975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463482453500640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |