Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq116 136 4e-27
seq73 123 2e-23
seq3 122 8e-23
seq57 102 8e-17
seq7 89.7 5e-13
seq1 87.8 2e-12
seq58 84.2 2e-11
seq45 84.2 2e-11
seq4 84.2 2e-11
seq93 82.4 7e-11
seq30 82.4 7e-11
>seq116
Length=7179089
Score = 136 bits (150), Expect = 4e-27
Identities = 151/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| || || ||| | | | || || ||||||||||
Sbjct 4848393 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCTTCCAGCTGCTTGC 4848451
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||| ||||||||| || |||||||| || ||||| ||||||| ||
Sbjct 4848452 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTTGCCT 4848511
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| |
Sbjct 4848512 TGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 4848571
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 4848572 TCTTCACAAAGATCTGCAT 4848590
>seq73
Length=12918409
Score = 123 bits (136), Expect = 2e-23
Identities = 149/199 (75%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || | |||||| | ||| | | | ||||| |||| ||||
Sbjct 707534 GGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCA-TCCTCCCGCTGTTTGC 707477
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || |||||||||||||| ||||| |||||||||||||| |||||| ||
Sbjct 707476 CAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATCTTGGTCT 707417
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| |||| || || | | ||||| ||||||||| ||||| |
Sbjct 707416 TGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATGGTTTTGCCCGTCAGGG 707357
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || || |||||
Sbjct 707356 TCTTCACAAAGATTTGCAT 707338
>seq3
Length=68754498
Score = 122 bits (134), Expect = 8e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || |||||||| | ||| | | | ||||| ||||| ||||
Sbjct 7045160 GGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGC 7045218
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| || |||||||||||||| || || |||||||||||||| |||||| ||
Sbjct 7045219 CAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCT 7045278
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| |||| || || || | ||||| ||| ||||| ||||| |
Sbjct 7045279 TGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCTTGCCCGTCAGGG 7045338
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || | || |||||
Sbjct 7045339 TCTTCACAGAGATTTGCAT 7045357
>seq57
Length=15126812
Score = 102 bits (112), Expect = 8e-17
Identities = 111/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1409802 GGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1409744
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||| ||||||||||| || ||||||||||||||||| |||||| ||
Sbjct 1409743 CAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 1409684
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGG 133606
| | | ||| | |||||| ||||
Sbjct 1409683 TCACGTTCTCGATGGTGTCGCTGGG 1409659
>seq7
Length=50527172
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| || || |||||||| || || || | || || || ||
Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| || || | || | | |||||| || ||||| || |||||||| || ||||||
Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | || | ||||| | ||| || | |||| ||||| ||| || || ||
Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||||||||
Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCAT 41286268
>seq1
Length=77654946
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||| |||| |||| || ||||||| | ||| | ||||| ||| |||||
Sbjct 73228519 GGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGTGCAGCCATCCTCCCGCTATTTGCC 73228460
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| || |||||||||||||| || || |||||||||||||| |||||| |||
Sbjct 73228459 AGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTT 73228400
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | || || || || | |||| ||| ||||| |||| ||
Sbjct 73228399 GACATTCTTGATGGTGTCACTAGGTTCAACCTCTAGAGTGATGGTCTTGCCCATCAGGGT 73228340
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 73228339 CTTCACAAAGATTTGCAT 73228322
>seq58
Length=14941408
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | |||||||| || || |||||||| || || || | || || || ||
Sbjct 5525701 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 5525760
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| || || | || | | |||||| || ||||| || |||||||| || ||||||
Sbjct 5525761 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 5525820
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | || | ||||| | ||| || || |||| |||| ||| || || ||
Sbjct 5525821 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 5525880
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||||||||
Sbjct 5525881 AAGGGTTTTCACGAAAATCTGCAT 5525904
>seq45
Length=18186770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/204 (71%), Gaps = 14/204 (7%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||| || |||||||| | ||| ||| | || || ||||| |||
Sbjct 11996479 GGTGGACTC---CTGGATGTTGTAATCAGAAAGAGTGTGACCA-TCTTCTGGCTGCCTGC 11996534
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
|||| | | ||| ||||||||||| || |||||||||||| | |||||| ||
Sbjct 11996535 CCGCAAAGAGGAGACGCTGCTGGTCTGGGATGATGCCTTCCTTATTCTGGATCTTGGCCT 11996594
Query 133582 TGAGCTGCTCAACC----GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637
| || |||| ||| || |||||||| | || | |||| ||| |||||||||
Sbjct 11996595 T----CGCGTAACCGATGGTGGCGCTGGGCTCCGCCTCCAGAGTGATGGTCTTGCCGGTC 11996650
Query 133638 AGAGTTTTT-ACGAAAATCTGCAT 133660
|| |||||| ||||| | |||||
Sbjct 11996651 AGCGTTTTTCACGAAGACTTGCAT 11996674
>seq4
Length=53591480
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| || || |||||||| || || || | || || || ||
Sbjct 13584055 ATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTG 13583996
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| || || | || |||| |||||| || ||||| || |||||||| || ||||||
Sbjct 13583995 CTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 13583936
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | || | ||||| | ||| || || || | |||| ||| || || |
Sbjct 13583935 GGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCAT 13583876
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || |||||||||||
Sbjct 13583875 AAGGGTTTTCACAAAAATCTGCAT 13583852
>seq93
Length=9247444
Score = 82.4 bits (90), Expect = 7e-11
Identities = 145/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAG--TCCT-CGA 133512
||| | ||||||||| || || |||||||| || || || | | | |||| | |
Sbjct 8914057 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCA 8914116
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| ||||| || || | || | | |||||| || ||||| || |||||||| || ||
Sbjct 8914117 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 8914176
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| ||| | | || | ||||| | ||| || || |||| |||| ||| || |
Sbjct 8914177 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 8914236
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| || || ||||| ||||||||||||||
Sbjct 8914237 CCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
>seq30
Length=29245334
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||||| ||||||| || |||| ||| | ||| | ||||| || |||||||
Sbjct 6909043 GGTGGAACCTTTCTGGATGCTGTAGTCGGAGAGAGTGCAGCCATCCTCCAGTTGCTTGCT 6908984
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
| | || ||| |||||||||| || ||||||||||||||| |||||| |||
Sbjct 6908983 GAGGAACATCAGCTGCTGCTGGTCAGGCCAGATGCCTTCCTTGTCTTGGATCTTGGCCTT 6908924
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||| | ||||| || |||| | |||| || | ||| ||||| |||| ||
Sbjct 6908923 GACATTCTCGATGGTGTCACTGAGCTCAGCCTCGAGGGCAATGGTCTTGCCCATCAGGGT 6908864
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 6908863 CTTCACAAAGATTTGCAT 6908846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483354946001520
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