Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq116 136 4e-27 seq73 123 2e-23 seq3 122 8e-23 seq57 102 8e-17 seq7 89.7 5e-13 seq1 87.8 2e-12 seq58 84.2 2e-11 seq45 84.2 2e-11 seq4 84.2 2e-11 seq93 82.4 7e-11 seq30 82.4 7e-11 >seq116 Length=7179089 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 4848393 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCTTCCAGCTGCTTGC 4848451 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| || ||||| ||||||| || Sbjct 4848452 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTTGCCT 4848511 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 4848512 TGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 4848571 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 4848572 TCTTCACAAAGATCTGCAT 4848590 >seq73 Length=12918409 Score = 123 bits (136), Expect = 2e-23 Identities = 149/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || | |||||| | ||| | | | ||||| |||| |||| Sbjct 707534 GGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCA-TCCTCCCGCTGTTTGC 707477 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||||||||||||| ||||| |||||||||||||| |||||| || Sbjct 707476 CAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATCTTGGTCT 707417 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||| || || | | ||||| ||||||||| ||||| | Sbjct 707416 TGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATGGTTTTGCCCGTCAGGG 707357 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 707356 TCTTCACAAAGATTTGCAT 707338 >seq3 Length=68754498 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| | ||| | | | ||||| ||||| |||| Sbjct 7045160 GGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGC 7045218 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| || |||||||||||||| || || |||||||||||||| |||||| || Sbjct 7045219 CAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCT 7045278 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||| || || || | ||||| ||| ||||| ||||| | Sbjct 7045279 TGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCTTGCCCGTCAGGG 7045338 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || | || ||||| Sbjct 7045339 TCTTCACAGAGATTTGCAT 7045357 >seq57 Length=15126812 Score = 102 bits (112), Expect = 8e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1409802 GGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1409744 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| || ||||||||||||||||| |||||| || Sbjct 1409743 CAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 1409684 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGG 133606 | | | ||| | |||||| |||| Sbjct 1409683 TCACGTTCTCGATGGTGTCGCTGGG 1409659 >seq7 Length=50527172 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| || || |||||||| || || || | || || || || Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || | | |||||| || ||||| || |||||||| || |||||| Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | ||| || | |||| ||||| ||| || || || Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||||||||||||| Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCAT 41286268 >seq1 Length=77654946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||| |||| || ||||||| | ||| | ||||| ||| ||||| Sbjct 73228519 GGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGTGCAGCCATCCTCCCGCTATTTGCC 73228460 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| || |||||||||||||| || || |||||||||||||| |||||| ||| Sbjct 73228459 AGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTT 73228400 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || || || || | |||| ||| ||||| |||| || Sbjct 73228399 GACATTCTTGATGGTGTCACTAGGTTCAACCTCTAGAGTGATGGTCTTGCCCATCAGGGT 73228340 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 73228339 CTTCACAAAGATTTGCAT 73228322 >seq58 Length=14941408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||||| || || |||||||| || || || | || || || || Sbjct 5525701 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 5525760 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || | | |||||| || ||||| || |||||||| || |||||| Sbjct 5525761 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 5525820 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | ||| || || |||| |||| ||| || || || Sbjct 5525821 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 5525880 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||||||||||||| Sbjct 5525881 AAGGGTTTTCACGAAAATCTGCAT 5525904 >seq45 Length=18186770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/204 (71%), Gaps = 14/204 (7%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||| || |||||||| | ||| ||| | || || ||||| ||| Sbjct 11996479 GGTGGACTC---CTGGATGTTGTAATCAGAAAGAGTGTGACCA-TCTTCTGGCTGCCTGC 11996534 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | | ||| ||||||||||| || |||||||||||| | |||||| || Sbjct 11996535 CCGCAAAGAGGAGACGCTGCTGGTCTGGGATGATGCCTTCCTTATTCTGGATCTTGGCCT 11996594 Query 133582 TGAGCTGCTCAACC----GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 | || |||| ||| || |||||||| | || | |||| ||| ||||||||| Sbjct 11996595 T----CGCGTAACCGATGGTGGCGCTGGGCTCCGCCTCCAGAGTGATGGTCTTGCCGGTC 11996650 Query 133638 AGAGTTTTT-ACGAAAATCTGCAT 133660 || |||||| ||||| | ||||| Sbjct 11996651 AGCGTTTTTCACGAAGACTTGCAT 11996674 >seq4 Length=53591480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| || || |||||||| || || || | || || || || Sbjct 13584055 ATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTG 13583996 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || |||| |||||| || ||||| || |||||||| || |||||| Sbjct 13583995 CTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 13583936 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | ||| || || || | |||| ||| || || | Sbjct 13583935 GGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCAT 13583876 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||||||||| Sbjct 13583875 AAGGGTTTTCACAAAAATCTGCAT 13583852 >seq93 Length=9247444 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAG--TCCT-CGA 133512 ||| | ||||||||| || || |||||||| || || || | | | |||| | | Sbjct 8914057 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCA 8914116 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || | || | | |||||| || ||||| || |||||||| || || Sbjct 8914117 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 8914176 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | || | ||||| | ||| || || |||| |||| ||| || | Sbjct 8914177 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 8914236 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| |||||||||||||| Sbjct 8914237 CCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq30 Length=29245334 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| ||||||| || |||| ||| | ||| | ||||| || ||||||| Sbjct 6909043 GGTGGAACCTTTCTGGATGCTGTAGTCGGAGAGAGTGCAGCCATCCTCCAGTTGCTTGCT 6908984 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | | || ||| |||||||||| || ||||||||||||||| |||||| ||| Sbjct 6908983 GAGGAACATCAGCTGCTGCTGGTCAGGCCAGATGCCTTCCTTGTCTTGGATCTTGGCCTT 6908924 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| || |||| | |||| || | ||| ||||| |||| || Sbjct 6908923 GACATTCTCGATGGTGTCACTGAGCTCAGCCTCGAGGGCAATGGTCTTGCCCATCAGGGT 6908864 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 6908863 CTTCACAAAGATTTGCAT 6908846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483354946001520