Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq10 228 9e-55 seq64 161 1e-34 seq52 109 6e-19 >seq10 Length=48447015 Score = 228 bits (252), Expect = 9e-55 Identities = 627/956 (66%), Gaps = 5/956 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| ||| || | ||| |||| || || ||| ||| Sbjct 23182651 CCAGGGCTTTATGCCGCAGATGCTCATCCAAACAGTGGATGGCAAAGGGGTCGATATCCA 23182710 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||| ||||| || || || | ||| || ||| || ||||| | | ||||| | Sbjct 23182711 TATCAAACTTATTGGCAAAAAAGTGGTGTT--TTCG-CAGCATCCAGCTCAAGTCCCCAG 23182767 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | ||||||||| |||||||| || || ||||| || || || |||| || | Sbjct 23182768 CTCCAAAGATGCACACGGAGCGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCTCCCT 23182827 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 ||||| || || |||| |||||||| || ||||| | ||| | |||||| | Sbjct 23182828 TAGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTCACAACAGCATTCATGTCAG 23182887 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||| |||| | | | | | |||||| || | || | || || | || Sbjct 23182888 ACAAGTCGTATTTGTGGCTTAAGGAGAGTGATCCAGGGACCTCAGGGATCCTTTGGATAG 23182947 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| |||| || ||||| ||||| || |||| || ||| ||||| || || ||| Sbjct 23182948 TGGCCCAGAGGTACTCATCTGGGCTATAAGTGTCCTGCGCCCATTCCATAAA-TCTCTGG 23183006 Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 ||||| || | ||| | || || || || | || | |||||| || || Sbjct 23183007 ATGTTTTCATTCTCTAGCACATAGCCCACATATTCTCTACTGACCACAAAGTAGGCACTG 23183066 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| || | | | || || || ||||| | ||| |||| | | Sbjct 23183067 CCTGAAAACAGAGGGGTTTGGAGTGGGGGCCGCACTTTGGCAGTCCCCATGTTCGTCAGC 23183126 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 | || | || | | | ||| ||||||| | ||| ||| | | | Sbjct 23183127 TTCCCATTCACAATGGCATAATGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCTTC 23183186 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 || || ||||| |||| ||| | | ||| |||| | || ||||| || ||| Sbjct 23183187 TCCGTTTCTAGGTTGTTTTCTCCCATGAGTGACTTGAGCTTCCTGACAATCTCGAGGTTG 23183246 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 || |||| ||||| || | || || ||||| || | ||| |||| | || | | Sbjct 23183247 GTTTTAATAGGAAAATCCATCCCACACAGATTGATCAAGTATCTCCAGCGCGCACTCATT 23183306 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | ||| || ||||| | ||||| || |||||||| || || ||||| || || || || Sbjct 23183307 CGGTAGAGGTCCTGCATGCAGTTGAGGTCGGCCTGAACTCGGCTCCATGATGCATAAACC 23183366 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837 || |||||||| |||| |||||||| || |||||| || | || ||| |||| Sbjct 23183367 ACATTCTCCAACTGGCTGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCCTTCACC 23183426 Query 162838 GCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 || | |||| || || | |||| | || ||||| | |||||| | ||||||||| Sbjct 23183427 GCAGCTAAGAAGGTCTCCTCTGATTTCTTGTCCACGTGGATGCAGTAGAAATTCTGAGGC 23183486 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 |||||||||||| || | || || | ||| || ||||| || || ||||| || ||| Sbjct 23183487 ATGTAGATGGCCCTTAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATGGAA 23183546 Query 162958 TACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCG 163013 || || || ||||| | || || || | |||||| | |||||| || ||||| Sbjct 23183547 TATGCAATTGGGAAGTTCGCTTCTTCTCTACTGAGGGGTTCTGTAATATATTTGCG 23183602 >seq64 Length=13628464 Score = 161 bits (178), Expect = 1e-34 Identities = 358/527 (68%), Gaps = 15/527 (3%) Strand=Plus/Plus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 ||| || || | ||||| | || || | ||| |||||||| | ||| | |||| ||| Sbjct 2970372 GGCAAGCTCACTGGGGGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGGATGTA 2970431 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 ||||||||| || || || |||| ||| || || | || || | || |||| || || Sbjct 2970432 ATTTTCGTAGTTTTCCCTAGATGGTCCCAGAACAACAGGCACAGAGCCAGCCAGAAAAGC 2970491 Query 177065 TCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAA 177124 |||||| ||||| || || || || |||| | |||||| ||||| | ||||| || Sbjct 2970492 ATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAGGAAAGATAAAA 2970551 Query 177125 TTTACAGGAAGATAGTAGCGGG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 ||| || | |||| ||| ||| || | | | || | ||| ||||| | | | Sbjct 2970552 TTTGCAAGTGGATA-TAGTGGGAATCAGATTTTTGTCATTCACATACTCTCCGAAGGCTT 2970610 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 |||||| || || || ||| || |||||||| |||||| || || || || Sbjct 2970611 GCCCGTAGGTGTGGATCTCAATGCTCTTGCTGAGCTCGTTGTAGTA-CTTGACCCTGGCG 2970669 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC--GGGAACGG 177300 || || |||||| |||||||| |||||||| || | | | ||| |||| || | | | Sbjct 2970670 TGCTCAGGGTTCCAGTTGCTGACCACCCAGCACACCAGCCT-CTCCTTGCTGGGCACCTG 2970728 Query 177301 GATTCGATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 || | || || | | || | ||| || | || || ||||| || ||||| | Sbjct 2970729 GA----ACACGAAGGGGCTTGTGCTCACCGTCAGGAAGCCGTAAGGCACTTGGATATCTG 2970784 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 ||||||||| ||| || | || || ||||| | || || || | ||| |||| ||| Sbjct 2970785 AGTCGCGTCGGTAAGTCAGGGTCAGGTTGAACAAGTGCTCGATGCCGCTTTTTTG--GGG 2970842 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGG 177465 ||| | | || ||||| || |||||||| ||||| |||||||||| Sbjct 2970843 AGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTTTGAAAGG 2970889 >seq52 Length=16149810 Score = 109 bits (120), Expect = 6e-19 Identities = 231/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||| ||||| || |||||| || | || || ||| Sbjct 6864125 ACCATCTCGGCATTGGTCTTGATGGGGAAGTCTGTCCCGCAGGTGTTCAGAAAGTACTTC 6864066 Query 162703 CACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTC 162762 || ||| | || | || || | | ||||| || || ||||| || | | Sbjct 6864065 CAGGGCACGGGGCTTCGGAGCAAGTCTTCCATGCAGTTGAGGTCAGCCTGCACCCTGGAC 6864006 Query 162763 CACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAA 162822 ||||| || || || || | ||| | || |||| || ||||| ||| ||| || || Sbjct 6864005 CACGAGGCATAGACCACTGTGACCAGCTTACTGGCCACGAAGACGTTGGGGAAGCAGGAG 6863946 Query 162823 ACTATCCCCATCACGGCCAGTGAGAACA--TCGGGTCCGCTTTCCTATCTACGTGTACGC 162880 | || || | || ||| || ||| || || | || ||| ||||| |||| Sbjct 6863945 GCAATGGCCCTGACAGCCTTTGCGAAGGACTCTGGG--GACTTGTGATCCACGTGGACGC 6863888 Query 162881 AGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTAT 162940 |||| | |||||||||||||| | || | ||| | ||||| || |||| ||||| | Sbjct 6863887 AGTAGATGTTCTGAGGGGCGTACAAAGCTCGCAGCAGCCTCTCAAAGCTCTCGATCTTCT 6863828 Query 162941 GGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||| ||||| || || || || |||||||| |||||||| || Sbjct 6863827 CGTGAACCACCATGGAGTAGGCGATGGGGAAGTCAGCCTCTTC 6863785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578353203100800