Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq116 89.7 3e-13 seq3 89.7 3e-13 >seq116 Length=7179089 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| ||| || || |||||||| || || Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || || |||||||| |||| | |||||| || | || Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | || | || | |||||| || | ||||| Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTT-TGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 4848542 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 4848543 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq3 Length=68754498 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || ||| |||||| || ||||||||||| ||| Sbjct 7045131 CCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAG 7045190 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || || | |||| |||||||| ||| | || Sbjct 7045191 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGA 7045250 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | |||| || | |||||| || | ||| || Sbjct 7045251 ATGCCTTCCTTGTCTTGGATCTT-GGCCTTGACATTCTCGATGGTGTCACTGGGTTCAAC 7045309 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || ||| |||| ||||| Sbjct 7045310 CTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328660341740160