Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 seq5 104 6e-17 seq89 91.5 3e-13 seq7 89.7 1e-12 seq58 86.0 1e-11 >seq3 Length=68754498 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || || ||| || ||| Sbjct 46699553 CAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAACCCTCGGAC 46699612 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || |||||||||||| || || || Sbjct 46699613 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAG 46699672 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || |||||||| |||||||||| || ||||| | || ||||| | Sbjct 46699673 AGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGGAGTTCTTTGTCTGACTACAATATT 46699732 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||| || ||||| ||||| |||||||||| Sbjct 46699733 CAAAAGAAGTCCACCCTTCATCTTGTACTGAGACTTCG 46699770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| ||||| ||||| || |||| || || | ||| ||||||| ||||| Sbjct 46699770 CGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAA 46699711 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 || ||||||||||| |||||||| || ||||| || Sbjct 46699710 CTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAG 46699676 >seq5 Length=53451024 Score = 104 bits (114), Expect = 6e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || || ||| || ||| Sbjct 40328230 CAGATTTTTATGAAAACCCTTACGGGGAAGACCATCACACTTGAGGTTGAACCCTCGGAC 40328289 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || ||||||||| || || || Sbjct 40328290 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 40328349 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || |||||||| ||||||||||| | | |||| | || ||||| || Sbjct 40328350 AGGCTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGCAATTTGTCTGACTACAATATC 40328409 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || || |||| || ||| | ||||| ||||||||| Sbjct 40328410 CAAAAGAAGTCCACCCTTTATCTTGTGCTGAGACTTC 40328446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||||| ||||| | ||| || |||| || |||| ||| ||||||| |||| | | Sbjct 40328446 GAAGTCTCAGCACAAGATAAAGGGTGGACTTCTTTTGGATATTGTAGTCAGACAAATTGC 40328387 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| |||||||| || ||||| |||| || ||| Sbjct 40328386 GTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGA 40328343 >seq89 Length=9688204 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/97 (81%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| ||||| ||||| || |||||||| || | || ||||||| |||||| Sbjct 7024331 CGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTT-TGAATGTTGTAGTCAGACAAAGTA 7024389 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 | ||||||||||| |||||||| || ||||| |||| Sbjct 7024390 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCC 7024426 >seq7 Length=50527172 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| ||||| ||||| || ||||| || || | ||| ||||||| |||||| Sbjct 41286048 CGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 41286107 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | ||||||||||| |||||||| || ||||| Sbjct 41286108 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGAT 41286139 >seq58 Length=14941408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| ||||| ||||| || |||| || || | ||| ||||||| |||||| Sbjct 5525684 CGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTA 5525743 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | ||||||||||| |||||||| || ||||| Sbjct 5525744 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGAT 5525775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181655781623058