Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 3e-20
seq5 104 6e-17
seq89 91.5 3e-13
seq7 89.7 1e-12
seq58 86.0 1e-11
>seq3
Length=68754498
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || ||||| | || || ||| || |||
Sbjct 46699553 CAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAACCCTCGGAC 46699612
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| |||||| ||||| || || |||||||||||| || || ||
Sbjct 46699613 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAG 46699672
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||| ||||| || |||||||| |||||||||| || ||||| | || ||||| |
Sbjct 46699673 AGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGGAGTTCTTTGTCTGACTACAATATT 46699732
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || |||| || ||||| ||||| ||||||||||
Sbjct 46699733 CAAAAGAAGTCCACCCTTCATCTTGTACTGAGACTTCG 46699770
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|||||||||| ||||| ||||| || |||| || || | ||| ||||||| |||||
Sbjct 46699770 CGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAA 46699711
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
|| ||||||||||| |||||||| || ||||| ||
Sbjct 46699710 CTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAG 46699676
>seq5
Length=53451024
Score = 104 bits (114), Expect = 6e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || ||||| | || || ||| || |||
Sbjct 40328230 CAGATTTTTATGAAAACCCTTACGGGGAAGACCATCACACTTGAGGTTGAACCCTCGGAC 40328289
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| |||||| ||||| || || || ||||||||| || || ||
Sbjct 40328290 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 40328349
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| || ||||| || |||||||| ||||||||||| | | |||| | || ||||| ||
Sbjct 40328350 AGGCTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGCAATTTGTCTGACTACAATATC 40328409
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389
|| || |||| || ||| | ||||| |||||||||
Sbjct 40328410 CAAAAGAAGTCCACCCTTTATCTTGTGCTGAGACTTC 40328446
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
||||||||| ||||| | ||| || |||| || |||| ||| ||||||| |||| | |
Sbjct 40328446 GAAGTCTCAGCACAAGATAAAGGGTGGACTTCTTTTGGATATTGTAGTCAGACAAATTGC 40328387
Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|||||||||||| |||||||| || ||||| |||| || |||
Sbjct 40328386 GTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGA 40328343
>seq89
Length=9688204
Score = 91.5 bits (100), Expect = 3e-13
Identities = 79/97 (81%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|||||||||| ||||| ||||| || |||||||| || | || ||||||| ||||||
Sbjct 7024331 CGAAGTCTCAGTACAAGATGAAGGGTGGACTCTTT-TGAATGTTGTAGTCAGACAAAGTA 7024389
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848
| ||||||||||| |||||||| || ||||| ||||
Sbjct 7024390 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCC 7024426
>seq7
Length=50527172
Score = 89.7 bits (98), Expect = 1e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|||||||||| ||||| ||||| || ||||| || || | ||| ||||||| ||||||
Sbjct 41286048 CGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 41286107
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
| ||||||||||| |||||||| || |||||
Sbjct 41286108 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGAT 41286139
>seq58
Length=14941408
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|||||||||| ||||| ||||| || |||| || || | ||| ||||||| ||||||
Sbjct 5525684 CGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTA 5525743
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
| ||||||||||| |||||||| || |||||
Sbjct 5525744 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGAT 5525775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181655781623058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |