Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 1e-13
seq58 84.2 2e-11
>seq3
Length=68754498
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| || ||||| | ||||| |||||| ||||| ||| ||||| || |||||||||
Sbjct 19123017 TACTCTACTATTTCTGTGCACAAGTTGCTACATTTGATGGTTCCCAGGTTCTGCTGATTG 19123076
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614
|| ||||| || || | |||||| ||||||||||||| ||| |||||
Sbjct 19123077 CTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTC 19123126
>seq58
Length=14941408
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||| |||||||| |||||||| || |||||| |||||| || || || || | |
Sbjct 5525711 GACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCA 5525770
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| ||||| ||||| || ||||| ||||| || || || |
Sbjct 5525771 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 5525830
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||| || | || || || |||| ||| | || || || || || |||||
Sbjct 5525831 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTC 5525890
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 5525891 ACGAAAATCTGCAT 5525904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476546273639280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |