Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq105 104 7e-19
seq116 102 3e-18
seq183 98.7 3e-17
seq154 98.7 3e-17
seq15 98.7 3e-17
seq3 98.7 3e-17
seq46 78.8 3e-11
>seq105
Length=8130718
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 2865770 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCTTGGTTCAATC 2865829
Query 2829 CCGGGCTTCAGC 2840
|| || ||||||
Sbjct 2865830 CCAGGTTTCAGC 2865841
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2862374 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2862433
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2862434 CCGGGTTTCGGC 2862445
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2872202 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2872261
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2872262 CCGGGTTTCGGC 2872273
>seq116
Length=7179089
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 4868750 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 4868691
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 4868690 TCCCGGGTTTCGGC 4868677
>seq183
Length=2121161
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 203739 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 203798
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 203799 CCGGGTTTCGGC 203810
>seq154
Length=3898418
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2363623 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2363682
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2363683 CCGGGTTTCGGC 2363694
>seq15
Length=38784467
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 33895008 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 33894949
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 33894948 CCGGGTTTCGGC 33894937
>seq3
Length=68754498
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 65844477 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 65844418
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 65844417 CCGGGTTTCGGC 65844406
>seq46
Length=17559326
Score = 78.8 bits (86), Expect = 3e-11
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833
||||| |||||||||||||||||| |||||||||| |||||||| ||| |||| || |||
Sbjct 10980285 AGTAGTTCAGTTGGGAGAGCATTAAACTGAAGATCAAAAGGTCCTTGGCTCAATCCTGGG 10980226
Query 2834 CTT 2836
||
Sbjct 10980225 TTT 10980223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847710777210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |