Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq189 257 2e-63 seq19 194 2e-44 seq15 172 6e-38 seq62 129 7e-25 seq48 107 2e-18 >seq189 Length=1716036 Score = 257 bits (284), Expect = 2e-63 Identities = 247/317 (78%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||| ||||||||||| || |||||||||| || ||||| ||| | |||||| ||| Sbjct 666407 GTGGTAACCCAGGATGAAAGAATGCTGCTGAATACACCAGCATCCTTACGATGCTCTCTG 666466 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || ||||| | ||||||| || |||||||||| ||| | | ||||| Sbjct 666467 AAAACGTCCCAGGAAGCCTTGATTGTGACTTGGCAGAAAAAGAAGGCTGTAAGCCCAGAA 666526 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||| |||||||||| ||||||||||| || |||||||||| | Sbjct 666527 AACATGGTCACTTACAGCAAGAACCACGGGGTTGTGGTCCAGCCCGCCTATAAGGACAGG 666586 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | ||||||||| | || ||||||| |||||||||||||| || ||||| || || || Sbjct 666587 GTGAACATCACCGAACTGGGACTCCGGAACTCAACCATCACCTTCTGGAACACGACATTG 666646 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||||||||| || |||| || ||||| || |||||||| |||||||| ||||| || Sbjct 666647 GAGGACGAGGGCTGTTACATGTGTCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGA 666706 Query 171372 GTGGCCTGCCTCACCCT 171388 ||||||||||||| Sbjct 666707 ACATCCTGCCTCACCCT 666723 Score = 141 bits (156), Expect = 1e-28 Identities = 181/248 (73%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || | ||||||| |||||||| || |||||||| Sbjct 669149 GTACAGCCCAAAGTATTCCTTCACTACACCATTTTTGAAGACCACCTAAATATCACCTGC 669208 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAG---ATTTCGGGGTCAGAAATT 171509 ||||||| ||| ||||| | || ||| | |||||| ||| ||| ||| || Sbjct 669209 TCTGCCACTGCTCGCCCAGCCCCCGTGATCTCCTGGAAGGGCATT---GGGACAGGGATC 669265 Query 171510 GAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTC 171569 || || |||| |||| || || ||| | ||||| || || ||||| ||||| | ||| Sbjct 669266 GAGAATAGTACCGAGAGTCAGTCACATGCAAATGGGACCACATCTGTCACCAGCATCCTC 669325 Query 171570 CAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTG 171629 | || ||||||||||||| ||| |||| |||||||| |||||||| ||| ||||| Sbjct 669326 CGCGTCAAAGACCCCAAGAATCAAGTGGGGAAGGAGGTGATCTGCCAGGTGCTATACCTG 669385 Query 171630 GGAAATGT 171637 |||| ||| Sbjct 669386 GGAACTGT 669393 >seq19 Length=34640225 Score = 194 bits (214), Expect = 2e-44 Identities = 508/773 (66%), Gaps = 34/773 (4%) Strand=Plus/Minus Query 146801 GGTGCGGGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCA 146860 |||| || | ||| ||||| | ||| ||||| | |||| || || || || | Sbjct 4394562 GGTGTGGATTGTACCCCTCAATCTGAAAGTCTTCCACATTGAAGTCATCAATCCTGTCAA 4394503 Query 146861 CCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCA 146920 || || || || |||||||| |||||||||| ||| || | ||||||||||||| Sbjct 4394502 CCTTCCCGAAGATTTTGAGCTTTGGGAAGGGTCTGGGTTTGCGCTGAAGCTGAATTTTCA 4394443 Query 146921 GGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCG 146980 | ||||||||||| || |||| |||||||||| || Sbjct 4394442 GTGGCTCCACGTGATTCAGGT------------------------GCACAAAGTCACC-- 4394409 Query 146981 GCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGA 147040 || ||||| || | | || ||||||||||||||| | |||||||| ||||||| Sbjct 4394408 --TTCAGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 4394351 Query 147041 AGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGT 147100 || | | |||||||||||||| || |||||||||||||||||||| || ||||||| | Sbjct 4394350 AGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACGGCTCCCCAT 4394291 Query 147101 CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCG 147160 |||| || | | |||| ||| |||| || ||||||||||| || ||||| Sbjct 4394290 TCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTT 4394231 Query 147161 CGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGA 147220 ||||||||||| | | | | ||| || ||||| | || || || | Sbjct 4394230 TTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAA 4394171 Query 147221 TAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTAC 147279 | || || |||||||| || || ||| || | || ||| || || Sbjct 4394170 TGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTG-AATGCATATCTTTGTGG 4394112 Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG 147339 |||| || |||||||||||||| || |||||||| |||| | | || ||| | Sbjct 4394111 TCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAAGAC-CCCTTCTTGTCG 4394053 Query 147340 TGC-GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCAC 147398 ||| ||||| || | | || ||| || ||||||| | || |||||||| ||| Sbjct 4394052 TGCAGAGAATTCCAAGCTGTCGAAAAAATCTTGGGACCCATTAGCATCCCAGATCTTCAC 4393993 Query 147399 TCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458 | |||||| || || | || | | ||||| ||| | | | ||| ||||||||||| Sbjct 4393992 TGCCTTGGATGACAG-TTTTTGGCATTTGTGGATCCCTTGGT-AGCCACAGCAGCTCCTC 4393935 Query 147459 CAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGA 147518 |||||| ||| |||| || || | ||| || || || || || | | | | || Sbjct 4393934 CAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGAAATTCGGCTCGGAGGCT 4393875 Query 147519 ATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCT 147571 || | |||||| ||||| ||| ||||||| ||||||| | ||||| Sbjct 4393874 GTAGCGCGCCTGCATGGTGAACACCGACTGCGTGCCGGTGCCCGCGCGGTCCT 4393822 >seq15 Length=38784467 Score = 172 bits (190), Expect = 6e-38 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || ||||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 20806123 CTTCAGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 20806182 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || |||||||||||||||||||| || | |||||| | Sbjct 20806183 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATT 20806242 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||||||| ||||| || ||||| ||||| Sbjct 20806243 CACCACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCAT 20806287 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| |||||||||||||| || || ||||| |||||||| || ||| |||| Sbjct 20809588 GCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC-CCCTTCTTGTCGTGC 20809646 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | |||||| || ||||||| | || |||||||| |||||| Sbjct 20809647 AGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCATCCCAGATCTTCACTCC 20809706 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 ||||| || || || || | | ||||| ||| Sbjct 20809707 CTTGGATGACAGTTCTTTTGCATTTGTGGATCCC 20809740 >seq62 Length=14465377 Score = 129 bits (142), Expect = 7e-25 Identities = 116/148 (78%), Gaps = 12/148 (8%) Strand=Plus/Plus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || |||||||| |||| ||||| | ||||||||||||||| ||||||||| ||| ||| | Sbjct 10947330 TTTAGGGTTACCTGGGCTGCCAAGTCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAG 10947389 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| ||||||||||| ||| ||||| ||| | |||||||| || | Sbjct 10947390 TGATGCCCCAGGCCGAGAACCAC------------GGCCCAGACGTCAAGGAGCACGTGA 10947437 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCT 178375 ||| |||||||| ||||| |||||||| Sbjct 10947438 CCTCCCTGGGGGAGAAGCTGAAGACCCT 10947465 >seq48 Length=17343058 Score = 107 bits (118), Expect = 2e-18 Identities = 201/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||||| |||| | | |||| | Sbjct 17206122 GTATTCCCTGGTGTTCATTATTGGTCTCCTGGGCAATGTGATGGTTGTGGTGATCCTTAC 17206181 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| | ||||||| || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 17206182 AAAGTATAGGAGGCTCCAAATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 17206241 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 ||||||| | | |||| | || || |||||| | | | ||| |||| || Sbjct 17206242 CCTGCTGTTTCTCCTCACTATTCCATTCTGGATTAA--TTATGTTGGGTGGAA----TGA 17206295 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | | ||| ||||||||||| | | || ||| | ||| |||| Sbjct 17206296 GTGGATCTTTGGCCATTACATGTGTAAGCTCCTCTCTGGGTTTTATTATCTGGGCTTGTA 17206355 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||| || || | |||||||||||| ||||| | ||||||||||| || |||| Sbjct 17206356 CAGTGAGATCTTTTTTATCATCCTGCTGACTATTGACAGGTATCTGGCTATTGT 17206409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583408514347200