Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq154 185 1e-40 seq140 181 2e-39 seq29 179 5e-39 seq23 176 6e-38 >seq154 Length=3898418 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 2809955 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 2810008 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 | |||||||||||||| || |||||||| |||| ||||||| |||||| ||| Sbjct 2810009 TTCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 2810068 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 2810069 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 2810128 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2810129 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2810177 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 3574151 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 3574098 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| |||||| ||| Sbjct 3574097 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 3574038 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 3574037 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 3573978 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 3573977 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3573929 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 2836420 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCGAAGGCCATG 2836473 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| |||||| ||| Sbjct 2836474 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 2836533 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 2836534 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 2836593 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2836594 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2836642 Score = 168 bits (186), Expect = 1e-35 Identities = 173/225 (77%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 ||||||| ||||||||||||||| || | || |||| |||| ||||| | Sbjct 3652744 AGGTGCTGAAGCAGGTGCACCCCGACAC-----GAGCA-CCTCGTCCAAGGCCATGGGCA 3652691 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 ||||||||||||| || |||||||| |||| ||||||| |||||| ||||||| Sbjct 3652690 TCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTGG 3652631 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 ||| || |||||||||| || ||| |||| ||||||||||| |||||||||||| Sbjct 3652630 CGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGCCTGC 3652571 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 3652570 TGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3652526 Score = 113 bits (124), Expect = 6e-19 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 3688790 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 3688849 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 3688850 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3688901 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| |||| ||||||||||| ||||||| Sbjct 2989718 GCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGC 2989777 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2989778 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2989828 Score = 86.0 bits (94), Expect = 9e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| |||||||||||| | ||| ||| || ||||||| ||||||||| ||| Sbjct 3622490 GAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCC 3622431 Query 725133 GAGGGCACCA 725142 |||||||||| Sbjct 3622430 GAGGGCACCA 3622421 >seq140 Length=5458049 Score = 181 bits (200), Expect = 2e-39 Identities = 180/232 (78%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||||||||||||| || || |||| || |||| || Sbjct 5336880 ATCTACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCC 5336933 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||||||| || |||||||| |||| ||||||| |||||| Sbjct 5336934 ATGGGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCG 5336993 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 5336994 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 5337053 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 5337054 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 5337105 >seq29 Length=29433701 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 14431983 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 14431930 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| |||||| ||| Sbjct 14431929 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 14431870 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 14431869 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 14431810 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 14431809 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 14431761 Score = 96.9 bits (106), Expect = 5e-14 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 725042 CTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCAT 725101 || |||||||||| || ||| |||| ||||||||||| |||||||||||| | | Sbjct 14488991 CTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGCCTGCTGCT 14489050 Query 725102 GCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||||||| ||||||||| ||||||||||||| Sbjct 14489051 GCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 14489091 >seq23 Length=32015139 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| ||| || || |||| || |||| ||||| Sbjct 1901157 TACAAGGTGCTGAAGCAGGTGCATCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1901210 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| || ||||||| ||| Sbjct 1901211 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 1901270 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| ||||||||| Sbjct 1901271 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGC 1901330 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1901331 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1901379 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| ||| || || |||| || |||| ||||| Sbjct 1907871 TACAAGGTGCTGAAGCAGGTGCATCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1907818 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| || ||||||| ||| Sbjct 1907817 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 1907758 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| ||||||||| Sbjct 1907757 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGC 1907698 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1907697 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1907649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176760067869476