Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq116 114 1e-20
seq7 95.1 1e-14
seq73 91.5 1e-13
seq3 89.7 5e-13
seq133 84.2 2e-11
seq56 82.4 8e-11
>seq116
Length=7179089
Score = 114 bits (126), Expect = 1e-20
Identities = 169/237 (71%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| |||||||| || | ||| ||||| || ||||| ||||| || ||||||||||| | |
Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| |||| | || || ||||| ||||| ||||| |||| | |||||| || || ||
Sbjct 4848424 AA-GGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 4848482
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
||||| ||||| || || || ||| ||||| || | ||||| | |||||
Sbjct 4848483 GATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 4848542
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTT 134722
|| || || ||||| || ||||| | || || || || || ||||| || | |||
Sbjct 4848543 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTTCTGTTT 4848599
>seq7
Length=50527172
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| || || || || || ||||| ||||||||||| |||||||| | ||| || |
Sbjct 41286051 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAA-AGTACG 41286109
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || || || || || ||||| ||||| | ||||||||| || || || |||||
Sbjct 41286110 CCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTC 41286169
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || | ||||| || | ||| | ||||| ||
Sbjct 41286170 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGT 41286229
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || | ||||| |||||||| |||||
Sbjct 41286230 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
>seq73
Length=12918409
Score = 91.5 bits (100), Expect = 1e-13
Identities = 154/222 (69%), Gaps = 1/222 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||||||| ||||| || ||||| || || || |||| ||| || | ||| |
Sbjct 707554 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGG 707496
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || |||||||||| || || |||| |||||||| || || || ||||||||
Sbjct 707495 CCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCC 707436
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| ||||| || || ||||| || | ||||| | ||| || | || ||
Sbjct 707435 TTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTG 707376
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|||||||| || || | || || || || ||||||||||||
Sbjct 707375 ATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTTG 707334
>seq3
Length=68754498
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| || ||||| || || || |||||||| || | ||| |
Sbjct 7045140 AGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 7045199
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||||||||| || | |||| |||||||| || || || ||||||||
Sbjct 7045200 CCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCC 7045259
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| ||||| || || ||||| || | ||||| | ||| || || || ||
Sbjct 7045260 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTG 7045319
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | || || || | ||||||||||||
Sbjct 7045320 ATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTG 7045361
>seq133
Length=5915255
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| || || || || || ||||| ||||||||||| |||| ||| | ||| || ||
Sbjct 1746490 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGACAA-AGTATG 1746548
Query 134555 -AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613
|| || || || || || ||||| ||||| | ||||||||| || || || ||||
Sbjct 1746549 CCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTT 1746608
Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673
| || || || || || || || || | ||||| || | ||| || ||||| |
Sbjct 1746609 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTG 1746668
Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
| ||||| || || | | ||||| || ||||| |||||
Sbjct 1746669 TGATGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708
>seq56
Length=15139244
Score = 82.4 bits (90), Expect = 8e-11
Identities = 67/80 (84%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 21436 ACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAA 21495
|| ||| | ||||||||||||||||||||||||| | |||||||| |||||||| ||||
Sbjct 9286012 ACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAA 9285953
Query 21496 GGA-TTGCTGGCGTAAAAAC 21514
||| || ||| | ||||||
Sbjct 9285952 GGATTTTCTGCCTCAAAAAC 9285933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505329552102960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |