Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq116 114 1e-20 seq7 95.1 1e-14 seq73 91.5 1e-13 seq3 89.7 5e-13 seq133 84.2 2e-11 seq56 82.4 8e-11 >seq116 Length=7179089 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||| || | ||| ||||| || ||||| ||||| || ||||||||||| | | Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 4848424 AA-GGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 4848482 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| ||||| || || || ||| ||||| || | ||||| | ||||| Sbjct 4848483 GATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 4848542 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTT 134722 || || || ||||| || ||||| | || || || || || ||||| || | ||| Sbjct 4848543 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTTCTGTTT 4848599 >seq7 Length=50527172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| || || || || || ||||| ||||||||||| |||||||| | ||| || | Sbjct 41286051 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAA-AGTACG 41286109 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || || || ||||| ||||| | ||||||||| || || || ||||| Sbjct 41286110 CCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTC 41286169 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| | ||||| || Sbjct 41286170 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGT 41286229 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||||| |||||||| ||||| Sbjct 41286230 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq73 Length=12918409 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || ||||| || || || |||| ||| || | ||| | Sbjct 707554 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGG 707496 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||||| || || |||| |||||||| || || || |||||||| Sbjct 707495 CCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCC 707436 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| | ||| || | || || Sbjct 707435 TTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTG 707376 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || || | || || || || |||||||||||| Sbjct 707375 ATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTTG 707334 >seq3 Length=68754498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| || || || |||||||| || | ||| | Sbjct 7045140 AGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 7045199 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||||||||| || | |||| |||||||| || || || |||||||| Sbjct 7045200 CCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCC 7045259 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| | ||| || || || || Sbjct 7045260 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTG 7045319 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || || | |||||||||||| Sbjct 7045320 ATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTG 7045361 >seq133 Length=5915255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| || || || || || ||||| ||||||||||| |||| ||| | ||| || || Sbjct 1746490 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGACAA-AGTATG 1746548 Query 134555 -AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 || || || || || || ||||| ||||| | ||||||||| || || || |||| Sbjct 1746549 CCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTT 1746608 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || || || || | ||||| || | ||| || ||||| | Sbjct 1746609 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTG 1746668 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || | | ||||| || ||||| ||||| Sbjct 1746669 TGATGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 >seq56 Length=15139244 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 21436 ACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAA 21495 || ||| | ||||||||||||||||||||||||| | |||||||| |||||||| |||| Sbjct 9286012 ACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAA 9285953 Query 21496 GGA-TTGCTGGCGTAAAAAC 21514 ||| || ||| | |||||| Sbjct 9285952 GGATTTTCTGCCTCAAAAAC 9285933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505329552102960