Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4 98.7 8e-16
seq73 95.1 1e-14
seq5 91.5 1e-13
seq3 91.5 1e-13
seq58 87.8 2e-12
seq7 87.8 2e-12
>seq4
Length=53591480
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || ||||| ||||||||||| || | ||||| ||||| || || || ||
Sbjct 13584048 GTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCA 13583989
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | ||| ||||| || || | || || ||||| ||||||| ||
Sbjct 13583988 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 13583929
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| |||||| |||||||| || |||||| || || || || | || ||| | || |||
Sbjct 13583928 ACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTT 13583869
Query 27231 TTCACAAAGATTTGCAT 27247
|||||||| || |||||
Sbjct 13583868 TTCACAAAAATCTGCAT 13583852
>seq73
Length=12918409
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/229 (69%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| |||| || ||||| |||| || | || || ||||| || || | ||| ||
Sbjct 707565 TGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAG 707507
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| |||| | || || ||||||| || ||| | || || ||||| || || || |
Sbjct 707506 AGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAG 707447
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || || || || ||||||| | || | | || | ||||| ||| |||||
Sbjct 707446 GAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAA 707387
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| | ||| || || | |||||||||||| || |||||||||||||||||
Sbjct 707386 CCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338
>seq5
Length=53451024
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119
||||| ||||||||||| || ||||| | ||||| || || || || || | ||
Sbjct 40328414 TTTTGGATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCAGCAAAGATC 40328355
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
|| | ||| ||||| || || | || || ||||| ||||||| || | |||||
Sbjct 40328354 AGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCT 40328295
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | || |||||| || || || || | || ||||| || ||||||| |||
Sbjct 40328294 ATAGTGTCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGGGTTTTCATAAAA 40328235
Query 27240 ATTTGCAT 27247
|| |||||
Sbjct 40328234 ATCTGCAT 40328227
>seq3
Length=68754498
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119
||||||||||||||||| || | | | ||||| || || || || || | ||
Sbjct 46699737 TTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATC 46699678
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
|| | ||| ||||| || || | || |||||||| ||||||| || | |||||
Sbjct 46699677 AGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCT 46699618
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | || |||||| || || || || | || ||||| || |||||||||||
Sbjct 46699617 ATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAA 46699558
Query 27240 ATTTGCAT 27247
|| |||||
Sbjct 46699557 ATCTGCAT 46699550
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || |||| |||| |||| || | || || ||||| || || ||||| ||
Sbjct 7045129 TGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 7045188
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| |||| | || || |||||||| || ||| || || ||||| || || || |
Sbjct 7045189 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTG 7045248
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || || || || ||||||| || | | || | ||||| ||| |||||
Sbjct 7045249 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAA 7045308
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||||| || || | ||||||||||| || |||||| ||||||||||
Sbjct 7045309 CCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357
>seq58
Length=14941408
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119
||||||||||||||||| || | ||| | ||||| || || || || || | ||
Sbjct 5525717 TTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATC 5525776
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
| | ||| ||||| || || | || || ||||| ||||||| || | |||||
Sbjct 5525777 AATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCT 5525836
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | || |||||| || || || || | || ||||| || |||||||| ||
Sbjct 5525837 ATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAA 5525896
Query 27240 ATTTGCAT 27247
|| |||||
Sbjct 5525897 ATCTGCAT 5525904
>seq7
Length=50527172
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
|| ||| | ||| | || || || ||||||||||||||||| || | ||| | ||
Sbjct 41286056 CAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATC 41286115
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| || || || || || | || | | ||| ||||| || || | || || |||||
Sbjct 41286116 TTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 41286175
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| |||||| | || |||| | || || || || |
Sbjct 41286176 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGT 41286235
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || |||||||| || || |||||
Sbjct 41286236 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424877960478576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |