Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 seq73 95.1 1e-14 seq5 91.5 1e-13 seq3 91.5 1e-13 seq58 87.8 2e-12 seq7 87.8 2e-12 >seq4 Length=53591480 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| ||||||||||| || | ||||| ||||| || || || || Sbjct 13584048 GTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCA 13583989 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| ||||| || || | || || ||||| ||||||| || Sbjct 13583988 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 13583929 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||||| |||||||| || |||||| || || || || | || ||| | || ||| Sbjct 13583928 ACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTT 13583869 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 13583868 TTCACAAAAATCTGCAT 13583852 >seq73 Length=12918409 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| |||| || ||||| |||| || | || || ||||| || || | ||| || Sbjct 707565 TGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAG 707507 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||||| || ||| | || || ||||| || || || | Sbjct 707506 AGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAG 707447 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| | || | | || | ||||| ||| ||||| Sbjct 707446 GAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAA 707387 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||| || || | |||||||||||| || ||||||||||||||||| Sbjct 707386 CCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338 >seq5 Length=53451024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 ||||| ||||||||||| || ||||| | ||||| || || || || || | || Sbjct 40328414 TTTTGGATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCAGCAAAGATC 40328355 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 || | ||| ||||| || || | || || ||||| ||||||| || | ||||| Sbjct 40328354 AGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCT 40328295 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | || |||||| || || || || | || ||||| || ||||||| ||| Sbjct 40328294 ATAGTGTCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGGGTTTTCATAAAA 40328235 Query 27240 ATTTGCAT 27247 || ||||| Sbjct 40328234 ATCTGCAT 40328227 >seq3 Length=68754498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 ||||||||||||||||| || | | | ||||| || || || || || | || Sbjct 46699737 TTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATC 46699678 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 || | ||| ||||| || || | || |||||||| ||||||| || | ||||| Sbjct 46699677 AGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCT 46699618 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | || |||||| || || || || | || ||||| || ||||||||||| Sbjct 46699617 ATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAA 46699558 Query 27240 ATTTGCAT 27247 || ||||| Sbjct 46699557 ATCTGCAT 46699550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | || || ||||| || || ||||| || Sbjct 7045129 TGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 7045188 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || |||||||| || ||| || || ||||| || || || | Sbjct 7045189 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTG 7045248 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | ||||| ||| ||||| Sbjct 7045249 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAA 7045308 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || | ||||||||||| || |||||| |||||||||| Sbjct 7045309 CCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357 >seq58 Length=14941408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 ||||||||||||||||| || | ||| | ||||| || || || || || | || Sbjct 5525717 TTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATC 5525776 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 | | ||| ||||| || || | || || ||||| ||||||| || | ||||| Sbjct 5525777 AATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCT 5525836 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | || |||||| || || || || | || ||||| || |||||||| || Sbjct 5525837 ATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAA 5525896 Query 27240 ATTTGCAT 27247 || ||||| Sbjct 5525897 ATCTGCAT 5525904 >seq7 Length=50527172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 || ||| | ||| | || || || ||||||||||||||||| || | ||| | || Sbjct 41286056 CAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATC 41286115 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| || || || || || | || | | ||| ||||| || || | || || ||||| Sbjct 41286116 TTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 41286175 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| |||||| | || |||| | || || || || | Sbjct 41286176 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGT 41286235 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || |||||||| || || ||||| Sbjct 41286236 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424877960478576