Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq83 89.7 6e-13 seq3 87.8 2e-12 >seq83 Length=10591344 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| | |||||||||| ||| ||||||||||||||||| ||||| || || | Sbjct 7356289 AACGTGTGGTAGCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 7356231 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || ||||||||||| || || || || ||||| ||||| | || ||||| ||||| ||| Sbjct 7356230 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATT 7356171 Query 60099 TCCCGGGACGAGG 60111 || || |||| Sbjct 7356170 AGTCGAGATGAGG 7356158 >seq3 Length=68754498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || |||||| |||||||||||||| |||||||| || || |||||| Sbjct 19130210 AGCTGTTTCCTTTTGAGTATGAAAGATGACAGCATTGAAGGCATCTATGACACTCTCAAG 19130151 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||||||| |||||||||| | ||||| || || Sbjct 19130150 CAGTGCGCTTTGATCTCCAAGTCTGCTGGGGGGATTGG 19130113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 |||||||||||||| || | |||||||| || | ||||| ||| ||||||||| | Sbjct 19123026 ATTTCTGTGCACAAGTTGCTACATTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCGG 19123085 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||||| || |||||| ||||||||| || || ||||| Sbjct 19123086 TTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTC 19123126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548450077209120