Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq83 89.7 6e-13
seq3 87.8 2e-12
>seq83
Length=10591344
Score = 89.7 bits (98), Expect = 6e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038
||||| | |||||||||| ||| ||||||||||||||||| ||||| || || |
Sbjct 7356289 AACGTGTGGTAGCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 7356231
Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098
|| ||||||||||| || || || || ||||| ||||| | || ||||| ||||| |||
Sbjct 7356230 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATT 7356171
Query 60099 TCCCGGGACGAGG 60111
|| || ||||
Sbjct 7356170 AGTCGAGATGAGG 7356158
>seq3
Length=68754498
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||||||||| || |||||| |||||||||||||| |||||||| || || ||||||
Sbjct 19130210 AGCTGTTTCCTTTTGAGTATGAAAGATGACAGCATTGAAGGCATCTATGACACTCTCAAG 19130151
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
||||||| |||||||||| | ||||| || ||
Sbjct 19130150 CAGTGCGCTTTGATCTCCAAGTCTGCTGGGGGGATTGG 19130113
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|||||||||||||| || | |||||||| || | ||||| ||| ||||||||| |
Sbjct 19123026 ATTTCTGTGCACAAGTTGCTACATTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCGG 19123085
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||||||| || |||||| ||||||||| || || |||||
Sbjct 19123086 TTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTC 19123126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548450077209120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |