Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq42 104 3e-17
seq16 104 3e-17
>seq42
Length=18862759
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| |||||||||||||||||||||| ||||| || || || ||
Sbjct 7306596 GTGAAAATGTAACGAGGGCTTGCAGCATCCTTGCCACCATGGAGACGAGTTCCAAACTGA 7306537
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | || | ||| || ||||||||||||||||||| ||| |||
Sbjct 7306536 CCAATGGGCTGAAGCAAATTAATGTTATTACTTCCCACAAAGTTTTGAGCCAGGTTCACA 7306477
Query 117425 ATCGT 117429
|| ||
Sbjct 7306476 ATAGT 7306472
>seq16
Length=36376318
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||||||||| | ||| || | |||||||||||| ||||| |||||||||||
Sbjct 27015920 GTAAAGATGTATCGAGGGCTAGCAGAATCCTTGCCACCATGCAGCCTAGTTCCAAACTGA 27015861
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | ||||| | ||| ||| |||||| ||||||||||||||||| | |
Sbjct 27015860 CCAATGGGCTGCAAAAGGTTCAAGTTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 27015801
Query 152149 ATCGT 152153
|| ||
Sbjct 27015800 ATGGT 27015796
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| || ||||| |||| ||| |||| ||||||||||||| || | || || || ||
Sbjct 27015920 GTAAAGATGTATCGAGGGCTAGCAGAATCCTTGCCACCATGCAGCCTAGTTCCAAACTGA 27015861
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| ||| ||||||| ||| ||| ||||||||| || |||||||| |||| |
Sbjct 27015860 CCAATGGGCTGCAAAAGGTTCAAGTTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 27015801
Query 117425 ATCGT 117429
|| ||
Sbjct 27015800 ATGGT 27015796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547141455500400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |