Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq42 104 3e-17 seq16 104 3e-17 >seq42 Length=18862759 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| |||||||||||||||||||||| ||||| || || || || Sbjct 7306596 GTGAAAATGTAACGAGGGCTTGCAGCATCCTTGCCACCATGGAGACGAGTTCCAAACTGA 7306537 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | || | ||| || ||||||||||||||||||| ||| ||| Sbjct 7306536 CCAATGGGCTGAAGCAAATTAATGTTATTACTTCCCACAAAGTTTTGAGCCAGGTTCACA 7306477 Query 117425 ATCGT 117429 || || Sbjct 7306476 ATAGT 7306472 >seq16 Length=36376318 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | ||| || | |||||||||||| ||||| ||||||||||| Sbjct 27015920 GTAAAGATGTATCGAGGGCTAGCAGAATCCTTGCCACCATGCAGCCTAGTTCCAAACTGA 27015861 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| | ||| ||| |||||| ||||||||||||||||| | | Sbjct 27015860 CCAATGGGCTGCAAAAGGTTCAAGTTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 27015801 Query 152149 ATCGT 152153 || || Sbjct 27015800 ATGGT 27015796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| |||| ||| |||| ||||||||||||| || | || || || || Sbjct 27015920 GTAAAGATGTATCGAGGGCTAGCAGAATCCTTGCCACCATGCAGCCTAGTTCCAAACTGA 27015861 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| ||||||| ||| ||| ||||||||| || |||||||| |||| | Sbjct 27015860 CCAATGGGCTGCAAAAGGTTCAAGTTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 27015801 Query 117425 ATCGT 117429 || || Sbjct 27015800 ATGGT 27015796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547141455500400