Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq171 95.1 1e-14 >seq171 Length=3042471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | ||||| ||||| | | ||||||| Sbjct 1173479 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATCGCCC 1173538 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 | ||||| | ||| || || | |||||||| || | | ||| | |||||| || Sbjct 1173539 TGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCCTCTA 1173598 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATG-ATTACATGCCAATCCCGA 22813 |||||| |||||| ||||| || |||||| |||| || || ||||| ||||| || || Sbjct 1173599 TAATCTTCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACA-GCCAAGCCAGA 1173657 Query 22814 TCTAGGAGATATTCTTCCA 22832 | ||| || ||||||| Sbjct 1173658 GCGTGGAACTACTCTTCCA 1173676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603098631695520