Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq52 215 7e-51
seq269 141 1e-28
>seq52
Length=16149810
Score = 215 bits (238), Expect = 7e-51
Identities = 613/931 (66%), Gaps = 26/931 (3%)
Strand=Plus/Plus
Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730
||||||||| |||||||| || || |||||||||||||| || ||| | ||| | |||
Sbjct 6863773 CCCCTGAGCAGGGAAGAGGCTGACTTCCCCATCGCCTACTCCATGGTGGTTCACGAGAAG 6863832
Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790
||||||| || ||| | || ||| | || | |||||||| |||||| |||||||||||
Sbjct 6863833 ATCGAGAGCTTTGAGAGGCTGCTGCGAGCTTTGTACGCCCCTCAGAACATCTACTGCGTC 6863892
Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATC---CGGGGCGTCTCGGCCATCGCCAGG 13847
|||||||| ||||||| | | |||| | || || ||| |||||| |||
Sbjct 6863893 CACGTGGATCACAAGTCC--CCA-GAGTCCTTCGCAAAGGCTGTCAGGGCCATTGCCTCC 6863949
Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907
|||||||| ||||| | ||||| |||| | ||||| || | ||| |||
Sbjct 6863950 TGCTTCCCCAACGTCTTCGTGGCCAGTAAGCTGGTCACAGTGGTCTATGCCTCGTGGTCC 6864009
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
| |||||||| ||||||| ||||||| ||| || | |||||| |||| |
Sbjct 6864010 AGGGTGCAGGCTGACCTCAACTGCATGGAAGACTTGCTCCGAAGCCCCGTGCCCTGGAAG 6864069
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
||| | || ||| ||||||| |||||||| |||||||||| ||||| || | |
Sbjct 6864070 TACTTTCTGAACACCTGCGGGACAGACTTCCCCATCAAGACCAATGCCGAGATGGTCCAG 6864129
Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084
|| || ||| || |||| || | | ||||| |||| |||||| | ||
Sbjct 6864130 GCCCTCAAGTTATTGAAAGGCAGGAGCAGCATGGAGTCGGAGG---TGCCCACTGCCTAC 6864186
Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCG-TGGTGGTCAACAC 14143
|| ||||| ||| | | ||||||||| || ||| | || | |||
Sbjct 6864187 AAAAGAAACCGCTGGAGGTACCGCTACGTGGTGG-GAGACGCGCTGACCCTGTCCGTCAC 6864245
Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203
|||| | | ||| ||||||| || | || || |||| || | || || || ||| |
Sbjct 6864246 CGGCCAGGAGAAGACCCCGCCCCCTCACAATGTCACCATGTTCACTGGCAATGCCTACAT 6864305
Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC---CTGCT 14260
| || | || || ||| | | | |||| | || | || || | ||
Sbjct 6864306 AGTGGCTTCTCGAGACTTCATCCAGCAC-TCCT--TGAACCATCCCAAATCCCAACAACT 6864362
Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320
|| | ||| | || || |||||||| || |||||||| ||||||||| | ||| |
Sbjct 6864363 GATTGAATGGGCAAAAGATACCTACAGCCCGGATGAGCACCTCTGGGCCACCCTTCAGCG 6864422
Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380
| ||| ||| || | ||| ||| ||||| ||||| || ||||||
Sbjct 6864423 TGCCTCGTGGATGCCTGGTTCTCTGCCCTCACACCACAAGTTTGACACGTCCGACATGAT 6864482
Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440
| ||| | |||| | ||||||||||| || ||||||| || |||| | ||||| |
Sbjct 6864483 GTCCATTGCCAGGCTGGTCAAGTGGCAAAACCACGAGGGAGACATCAGTCACGGGGCGCC 6864542
Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500
||| | |||||| ||||||||| || |||||||||| ||||| || ||| |
Sbjct 6864543 TTACTCCCCTTGCTCTGGCATCCACCAGAGGGCGGTCTGCATCTTTGGGTCTGGGGACCT 6864602
Query 14501 GAAGTGG---CTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGA 14557
| | ||| || | | || |||||| | ||||||||||| ||| || |||
Sbjct 6864603 GCACTGGATTCTCCAAA---ACCACCACCTGCTGGCCAACAAGTTTGACCCAAAGGTGGA 6864659
Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGAC 14588
||| |||| ||| |||||||| ||| ||
Sbjct 6864660 CGATAACGCCCTGCAGTGTCTGGAGGAGTAC 6864690
>seq269
Length=174708
Score = 141 bits (156), Expect = 1e-28
Identities = 254/369 (69%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730
|| ||| || ||| ||| |||| || ||| | ||||| || || ||||| |||||
Sbjct 82507 CCGCTGTCCCAGGAGGAGCTCGACTTCCCCCTGGCCTATGTCATGGTCATCCATCACAAC 82566
Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790
|||| | |||| || ||| | |||||| ||| | ||||||||| | ||||||||
Sbjct 82567 TTCGACACCTTCGTCCGGCTCTTCAGGGCCGTCTTCATGCCGCAGAACGTGTACTGCGTG 82626
Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG--T 13848
||||||||| ||| | || |||||||| | ||| | ||| | | | |
Sbjct 82627 CACGTGGACGAGAAGGCGCCCGCCGAGTTCAAGGACGCCGTGCC--CCAGCTGCTGCGCT 82684
Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908
||||||| |||| ||||||| | || | | ||||| ||||| || |
Sbjct 82685 GCTTCCCCAACGCCTTCCTGGCCGCCAGGACGGAGCCGGTGGTCTACGGGGGCTTCTCCC 82744
Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968
| ||||||||||||||| |||||| ||||||| ||||||| || |||| ||
Sbjct 82745 GGCTGCAGGCCGACCTCAACTGCATCCGAGACCTGGCCGCCTCCGAGGTGCGCTGGAAGT 82804
Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028
|| |||||| |||||| ||||||||| || |||||||||| ||||||||| |||
Sbjct 82805 ACGCCCTCAACACCTGCGGGCAGGACTTCCCCCTGAAGACCAACCGGGAGATCGTCCGGT 82864
Query 14029 CGCTGAAGG 14037
|||||||
Sbjct 82865 ACCTGAAGG 82873
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971
||||||||||||||| ||||||| ||| |||| |||||||| || |||| |||||
Sbjct 104818 TGCAGGCCGACCTCAACTGCATGGAGGAGCTGGTGGCCTCCCCGGTGCCCTGGAAGTACC 104877
Query 13972 TGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031
| |||||| |||||| ||||||||| || |||||||||||||||||||| ||| |
Sbjct 104878 TCCTCAACGCCTGCGGGCAGGACTTCCCCCTGAAGACCAACCTGGAGATCGTCCGGTACC 104937
Query 14032 TGAA 14035
||||
Sbjct 104938 TGAA 104941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658649463252480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |