Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq52 215 7e-51 seq269 141 1e-28 >seq52 Length=16149810 Score = 215 bits (238), Expect = 7e-51 Identities = 613/931 (66%), Gaps = 26/931 (3%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||||||| |||||||| || || |||||||||||||| || ||| | ||| | ||| Sbjct 6863773 CCCCTGAGCAGGGAAGAGGCTGACTTCCCCATCGCCTACTCCATGGTGGTTCACGAGAAG 6863832 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||| || ||| | || ||| | || | |||||||| |||||| ||||||||||| Sbjct 6863833 ATCGAGAGCTTTGAGAGGCTGCTGCGAGCTTTGTACGCCCCTCAGAACATCTACTGCGTC 6863892 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATC---CGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||| ||||||| | | |||| | || || ||| |||||| ||| Sbjct 6863893 CACGTGGATCACAAGTCC--CCA-GAGTCCTTCGCAAAGGCTGTCAGGGCCATTGCCTCC 6863949 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| ||||| | ||||| |||| | ||||| || | ||| ||| Sbjct 6863950 TGCTTCCCCAACGTCTTCGTGGCCAGTAAGCTGGTCACAGTGGTCTATGCCTCGTGGTCC 6864009 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 | |||||||| ||||||| ||||||| ||| || | |||||| |||| | Sbjct 6864010 AGGGTGCAGGCTGACCTCAACTGCATGGAAGACTTGCTCCGAAGCCCCGTGCCCTGGAAG 6864069 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| | || ||| ||||||| |||||||| |||||||||| ||||| || | | Sbjct 6864070 TACTTTCTGAACACCTGCGGGACAGACTTCCCCATCAAGACCAATGCCGAGATGGTCCAG 6864129 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084 || || ||| || |||| || | | ||||| |||| |||||| | || Sbjct 6864130 GCCCTCAAGTTATTGAAAGGCAGGAGCAGCATGGAGTCGGAGG---TGCCCACTGCCTAC 6864186 Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCG-TGGTGGTCAACAC 14143 || ||||| ||| | | ||||||||| || ||| | || | ||| Sbjct 6864187 AAAAGAAACCGCTGGAGGTACCGCTACGTGGTGG-GAGACGCGCTGACCCTGTCCGTCAC 6864245 Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203 |||| | | ||| ||||||| || | || || |||| || | || || || ||| | Sbjct 6864246 CGGCCAGGAGAAGACCCCGCCCCCTCACAATGTCACCATGTTCACTGGCAATGCCTACAT 6864305 Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC---CTGCT 14260 | || | || || ||| | | | |||| | || | || || | || Sbjct 6864306 AGTGGCTTCTCGAGACTTCATCCAGCAC-TCCT--TGAACCATCCCAAATCCCAACAACT 6864362 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 || | ||| | || || |||||||| || |||||||| ||||||||| | ||| | Sbjct 6864363 GATTGAATGGGCAAAAGATACCTACAGCCCGGATGAGCACCTCTGGGCCACCCTTCAGCG 6864422 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 | ||| ||| || | ||| ||| ||||| ||||| || |||||| Sbjct 6864423 TGCCTCGTGGATGCCTGGTTCTCTGCCCTCACACCACAAGTTTGACACGTCCGACATGAT 6864482 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 | ||| | |||| | ||||||||||| || ||||||| || |||| | ||||| | Sbjct 6864483 GTCCATTGCCAGGCTGGTCAAGTGGCAAAACCACGAGGGAGACATCAGTCACGGGGCGCC 6864542 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 ||| | |||||| ||||||||| || |||||||||| ||||| || ||| | Sbjct 6864543 TTACTCCCCTTGCTCTGGCATCCACCAGAGGGCGGTCTGCATCTTTGGGTCTGGGGACCT 6864602 Query 14501 GAAGTGG---CTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGA 14557 | | ||| || | | || |||||| | ||||||||||| ||| || ||| Sbjct 6864603 GCACTGGATTCTCCAAA---ACCACCACCTGCTGGCCAACAAGTTTGACCCAAAGGTGGA 6864659 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGAC 14588 ||| |||| ||| |||||||| ||| || Sbjct 6864660 CGATAACGCCCTGCAGTGTCTGGAGGAGTAC 6864690 >seq269 Length=174708 Score = 141 bits (156), Expect = 1e-28 Identities = 254/369 (69%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||| || ||| ||| |||| || ||| | ||||| || || ||||| ||||| Sbjct 82507 CCGCTGTCCCAGGAGGAGCTCGACTTCCCCCTGGCCTATGTCATGGTCATCCATCACAAC 82566 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 |||| | |||| || ||| | |||||| ||| | ||||||||| | |||||||| Sbjct 82567 TTCGACACCTTCGTCCGGCTCTTCAGGGCCGTCTTCATGCCGCAGAACGTGTACTGCGTG 82626 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG--T 13848 ||||||||| ||| | || |||||||| | ||| | ||| | | | | Sbjct 82627 CACGTGGACGAGAAGGCGCCCGCCGAGTTCAAGGACGCCGTGCC--CCAGCTGCTGCGCT 82684 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| |||| ||||||| | || | | ||||| ||||| || | Sbjct 82685 GCTTCCCCAACGCCTTCCTGGCCGCCAGGACGGAGCCGGTGGTCTACGGGGGCTTCTCCC 82744 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | ||||||||||||||| |||||| ||||||| ||||||| || |||| || Sbjct 82745 GGCTGCAGGCCGACCTCAACTGCATCCGAGACCTGGCCGCCTCCGAGGTGCGCTGGAAGT 82804 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 || |||||| |||||| ||||||||| || |||||||||| ||||||||| ||| Sbjct 82805 ACGCCCTCAACACCTGCGGGCAGGACTTCCCCCTGAAGACCAACCGGGAGATCGTCCGGT 82864 Query 14029 CGCTGAAGG 14037 ||||||| Sbjct 82865 ACCTGAAGG 82873 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971 ||||||||||||||| ||||||| ||| |||| |||||||| || |||| ||||| Sbjct 104818 TGCAGGCCGACCTCAACTGCATGGAGGAGCTGGTGGCCTCCCCGGTGCCCTGGAAGTACC 104877 Query 13972 TGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031 | |||||| |||||| ||||||||| || |||||||||||||||||||| ||| | Sbjct 104878 TCCTCAACGCCTGCGGGCAGGACTTCCCCCTGAAGACCAACCTGGAGATCGTCCGGTACC 104937 Query 14032 TGAA 14035 |||| Sbjct 104938 TGAA 104941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658649463252480