Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 118 9e-22 seq116 113 4e-20 seq93 87.8 2e-12 seq138 86.0 5e-12 seq7 86.0 5e-12 seq4 86.0 5e-12 seq72 84.2 2e-11 seq133 82.4 7e-11 >seq3 Length=68754498 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || | ||| || || ||||| |||||| | || || || || || ||||| Sbjct 7045357 ATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCCAGT 7045298 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| |||||||| ||||| || || Sbjct 7045297 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 7045238 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | ||| ||| |||||||| |||| || | || | || ||||||||| Sbjct 7045237 CAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTACAAC 7045178 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| |||| |||| |||||||| Sbjct 7045177 ATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGGCAT 7045128 >seq116 Length=7179089 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || || || ||||| || Sbjct 4848590 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4848531 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| || || |||||||| ||||| || || || || Sbjct 4848530 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 4848471 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | ||| | || || |||||| Sbjct 4848470 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTACAAC 4848411 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| | ||| | | ||||| || Sbjct 4848410 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGAT 4848361 >seq93 Length=9247444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/241 (69%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||||| || Sbjct 8914264 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCG 8914205 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 8914204 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 8914145 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC---CGTT-TCCGATTA 27163 ||| | || || | || || || ||| |||||| || | | | | || || || || Sbjct 8914144 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGGAAGATGGGCGTACTTTGTCTGACTA 8914085 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA-TAACAA 27222 ||| |||||||||||||| ||| | ||| | || || | | || ||||| | ||| || Sbjct 8914084 CAATATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACTTCGTGGTGGTACTAAAAA 8914025 Query 27223 A 27223 | Sbjct 8914024 A 8914024 >seq138 Length=5537732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || | | | |||| ||||| || || || | Sbjct 893684 ATGCAGATTTTTGTGAAAACCCTTACGGGGACGACCATTATGCTTGAGGTTGAGCCCTTG 893743 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 893744 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 893803 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | | || || ||| ||||||| | || |||| || ||||| Sbjct 893804 CAGAGATTGATCTTTTCTGGAAAGCAACTGGAAGATGGGCGTACTTTTTCTGACTACAAT 893863 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| | || || | | || ||||| Sbjct 893864 ATTCAAAAGGAGTCCACCGTTCATCTTGTACTGAGACTTCGTGGTGG 893910 >seq7 Length=50527172 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || | ||||| || Sbjct 41286268 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCCTCG 41286209 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 41286208 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 41286149 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||| ||||||| | || | || || ||||| Sbjct 41286148 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAT 41286089 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| | || || | | || ||||| Sbjct 41286088 ATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACTTCGTGGTGG 41286042 >seq4 Length=53591480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || | || ||| | || || ||||| || ||||| || Sbjct 13583852 ATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACGCTTGATGTTGAACCCTCA 13583911 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 13583912 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 13583971 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | | || | || || || ||| ||||||| | || | || || || ||||| Sbjct 13583972 CAGAGGCTGATCTTTGCTGGAAAGCAACTGGAAGAT-GAGCGTACTTTGTCTGACTACAA 13584030 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA-TAACAAA 27223 || ||||||||||| ||| | ||| | || || | | || ||||| | ||| ||| Sbjct 13584031 TATCCAAAAGGAGTCCACCCTTCATCTTGTGCTGAGACTTCGTGGTGGTACTAAAAAA 13584088 >seq72 Length=12927576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| ||||| |||||||| || || ||| | || || || | || ||||| || Sbjct 11135585 ATGCAGAATTTTGTGAAAACTCTTACAGGGAAGACCATCACGCTGTAGGTTGAACCCTCG 11135526 Query 27048 GAC--TCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| |||| | | | ||||| | || || || || || ||||| || || || ||| Sbjct 11135525 GACATTCGAGAAAAGGTAGTCAAGGACAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 11135466 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTA 27163 || || | | | | || || ||| || ||||||| | || || || || || || Sbjct 11135465 CAGGAGAGGCTCACTTTTGCTGGTAAATAACTGGAAGATGGA-CGTCCTTTGTCTGACTA 11135407 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||||||||||||||||| ||| | ||| || Sbjct 11135406 CAACATTCAAAAGGAGTCCACCCTTCATCTG 11135376 >seq133 Length=5915255 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || | || ||| | || || || || || ||||| || Sbjct 1746708 ATGCAGATTTTTGTGAAAACCCTTAATGGGAAGACCATCACACTCGAGGTTGAACCCTCG 1746649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 1746648 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 1746589 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | || || | || || || ||| ||||||| | | | || || || |||| Sbjct 1746588 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGGCATACTTTGTCTGACCACAA 1746529 Query 27167 CATTCAAAAGGAGTCGACCTTACAT 27191 |||||||||||||| ||| | ||| Sbjct 1746528 TATTCAAAAGGAGTCCACCCTTCAT 1746504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434859153240960