Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 9e-22
seq116 113 4e-20
seq93 87.8 2e-12
seq138 86.0 5e-12
seq7 86.0 5e-12
seq4 86.0 5e-12
seq72 84.2 2e-11
seq133 82.4 7e-11
>seq3
Length=68754498
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || | ||| || || ||||| |||||| | || || || || || |||||
Sbjct 7045357 ATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCCAGT 7045298
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || |||||||| |||||||| ||||| || ||
Sbjct 7045297 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 7045238
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | ||| ||| |||||||| |||| || | || | || |||||||||
Sbjct 7045237 CAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTACAAC 7045178
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||| ||| | || |||| |||| |||| ||||||||
Sbjct 7045177 ATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGGCAT 7045128
>seq116
Length=7179089
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||| | || || || || ||||| ||
Sbjct 4848590 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4848531
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| ||| || || |||||||| ||||| || || || ||
Sbjct 4848530 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 4848471
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | |||||||| || ||||||| | ||| | || || ||||||
Sbjct 4848470 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTACAAC 4848411
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || |||| | ||| | | ||||| ||
Sbjct 4848410 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGAT 4848361
>seq93
Length=9247444
Score = 87.8 bits (96), Expect = 2e-12
Identities = 166/241 (69%), Gaps = 5/241 (2%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || || || || || ||||| ||
Sbjct 8914264 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCG 8914205
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || ||||| || || || |||||
Sbjct 8914204 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 8914145
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC---CGTT-TCCGATTA 27163
||| | || || | || || || ||| |||||| || | | | | || || || ||
Sbjct 8914144 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGGAAGATGGGCGTACTTTGTCTGACTA 8914085
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA-TAACAA 27222
||| |||||||||||||| ||| | ||| | || || | | || ||||| | ||| ||
Sbjct 8914084 CAATATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACTTCGTGGTGGTACTAAAAA 8914025
Query 27223 A 27223
|
Sbjct 8914024 A 8914024
>seq138
Length=5537732
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || || || | | | |||| ||||| || || || |
Sbjct 893684 ATGCAGATTTTTGTGAAAACCCTTACGGGGACGACCATTATGCTTGAGGTTGAGCCCTTG 893743
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || ||||| || || || |||||
Sbjct 893744 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 893803
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | | || || ||| ||||||| | || |||| || |||||
Sbjct 893804 CAGAGATTGATCTTTTCTGGAAAGCAACTGGAAGATGGGCGTACTTTTTCTGACTACAAT 893863
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||||||||| ||| | ||| | || || | | || |||||
Sbjct 893864 ATTCAAAAGGAGTCCACCGTTCATCTTGTACTGAGACTTCGTGGTGG 893910
>seq7
Length=50527172
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || || || || | ||||| ||
Sbjct 41286268 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCCTCG 41286209
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || ||||| || || || |||||
Sbjct 41286208 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 41286149
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || || ||| ||||||| | || | || || |||||
Sbjct 41286148 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAT 41286089
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||||||||| ||| | ||| | || || | | || |||||
Sbjct 41286088 ATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACTTCGTGGTGG 41286042
>seq4
Length=53591480
Score = 86.0 bits (94), Expect = 5e-12
Identities = 164/238 (69%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || | || ||| | || || ||||| || ||||| ||
Sbjct 13583852 ATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACGCTTGATGTTGAACCCTCA 13583911
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || ||||| || || || |||||
Sbjct 13583912 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 13583971
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
||| | | || | || || || ||| ||||||| | || | || || || |||||
Sbjct 13583972 CAGAGGCTGATCTTTGCTGGAAAGCAACTGGAAGAT-GAGCGTACTTTGTCTGACTACAA 13584030
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA-TAACAAA 27223
|| ||||||||||| ||| | ||| | || || | | || ||||| | ||| |||
Sbjct 13584031 TATCCAAAAGGAGTCCACCCTTCATCTTGTGCTGAGACTTCGTGGTGGTACTAAAAAA 13584088
>seq72
Length=12927576
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/211 (70%), Gaps = 5/211 (2%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||| ||||| |||||||| || || ||| | || || || | || ||||| ||
Sbjct 11135585 ATGCAGAATTTTGTGAAAACTCTTACAGGGAAGACCATCACGCTGTAGGTTGAACCCTCG 11135526
Query 27048 GAC--TCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
||| |||| | | | ||||| | || || || || || ||||| || || || |||
Sbjct 11135525 GACATTCGAGAAAAGGTAGTCAAGGACAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 11135466
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTA 27163
|| || | | | | || || ||| || ||||||| | || || || || || ||
Sbjct 11135465 CAGGAGAGGCTCACTTTTGCTGGTAAATAACTGGAAGATGGA-CGTCCTTTGTCTGACTA 11135407
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTG 27194
|||||||||||||||||| ||| | ||| ||
Sbjct 11135406 CAACATTCAAAAGGAGTCCACCCTTCATCTG 11135376
>seq133
Length=5915255
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/205 (69%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || | || ||| | || || || || || ||||| ||
Sbjct 1746708 ATGCAGATTTTTGTGAAAACCCTTAATGGGAAGACCATCACACTCGAGGTTGAACCCTCG 1746649
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || ||||| || || || |||||
Sbjct 1746648 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 1746589
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
||| | || || | || || || ||| ||||||| | | | || || || ||||
Sbjct 1746588 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGGCATACTTTGTCTGACCACAA 1746529
Query 27167 CATTCAAAAGGAGTCGACCTTACAT 27191
|||||||||||||| ||| | |||
Sbjct 1746528 TATTCAAAAGGAGTCCACCCTTCAT 1746504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434859153240960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |