Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19 316 2e-81 seq15 154 1e-32 >seq19 Length=34640225 Score = 316 bits (350), Expect = 2e-81 Identities = 452/634 (71%), Gaps = 2/634 (0%) Strand=Plus/Plus Query 34089 CGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGA 34148 |||| || ||| ||| || ||| ||||||| || ||||| | |||| | ||| Sbjct 4393759 CGCAGGGCGAGCCGCATTACCTGCGCCAGGTGGAGCACATCCTGCGCTGCGGCTTCAGGA 4393818 Query 34149 AGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACC 34208 || |||||| | || || || || | || |||||| || ||||| || |||| || Sbjct 4393819 AGAAGGACCGCGCGGGCACCGGCACGCAGTCGGTGTTCACCATGCAGGCGCGCTACAGCC 4393878 Query 34209 TTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGG 34268 | || | ||||||||| || || || ||||| |||| |||||||||||| | |||| Sbjct 4393879 TCCGAGCCGAATTTCCTCTACTCACATTCAAACGCGTGTTCTGGAAGGGCGTTTTGGAGG 4393938 Query 34269 AGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA 34328 ||||||||||| | |||| |||| || |||| | || || ||| || |||| Sbjct 4393939 AGCTGCTGTGGCTACCAAGGGAT-CCACAAATGCCAAAAA-CTGTCATCCAAGGCAGTGA 4393996 Query 34329 AGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGG 34388 |||||||||| ||| | ||||| | ||| ||| | |||| || ||| | | || Sbjct 4393997 AGATCTGGGATGCTAATGGGTCCCAAGATTTTTTCGACAGCTTGGAATTCTCTGCACGAC 4394056 Query 34389 AGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATC 34448 | || || | ||||||||| || || || ||||||||||| || || |||| ||| | Sbjct 4394057 AAGAAGGGGTCTTGGGCCCAGTGTATGGTTTCCAGTGGAGGCATTTCGGGGTGGACCACA 4394116 Query 34449 GGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACA 34508 | | | | || | |||||||| |||| |||||| |||| | || || || | Sbjct 4394117 AAGATATGCATTCAGATGACTCGGGACAAGGAGTGGACCAATTGCAAAAAGTCATTGATA 4394176 Query 34509 CCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || | || |||||||| |||||||| ||| |||||||| |||||||| || || | Sbjct 4394177 CCATCAAAACCAACCCTGACGACAGAAGAATCACCATGTGCGCCTGGAACCCAAAAGACC 4394236 Query 34569 TCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGG 34628 | |||||||||||||| || || |||| ||||||||| |||| || | |||||||| Sbjct 4394237 TTCCTCTGATGGCGCTGCCTCCCGGCCATGCCCTCTGCCTGCTCTAAGTGGTGAATGGGG 4394296 Query 34629 AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA 34688 ||| |||||||||||| || || | || ||||||||||| | || | || ||||||| Sbjct 4394297 AGCCGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGCGCGCTTCAACA 4394356 Query 34689 TTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 | || || || || |||||||| ||||||| ||| Sbjct 4394357 TCGCCAGCTATGCCCTGCTCACCTACATGAGCGC 4394390 Score = 316 bits (350), Expect = 2e-81 Identities = 452/634 (71%), Gaps = 2/634 (0%) Strand=Plus/Minus Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 ||| ||||||| |||||||| || || || || |||||||| || | || | |||||| Sbjct 4394390 GCGCTCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATG 4394331 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAG 6742 ||||| || | || || |||||||||||| ||||||||||| | || |||| ||||| Sbjct 4394330 TCTCCTGACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAG 4394271 Query 6743 AGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATC 6802 |||| |||| || || |||||||||||||| || || || |||||||| |||||||| Sbjct 4394270 AGGGCATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATG 4394211 Query 6803 ACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCC 6862 ||| |||||||| |||||||| || | ||| || || || | |||| |||||| Sbjct 4394210 GTGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCC 4394151 Query 6863 GCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922 |||| |||||||| | || | | | | | ||| |||| || || |||||| Sbjct 4394150 ACTCCTTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCAC 4394091 Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982 ||||| || || || ||||||||| | || || | || | | ||| || |||| Sbjct 4394090 TGGAAACCATACACTGGGCCCAAGACCCCTTCTTGTCGTGCAGAGAATTCCAAGCTGTCG 4394031 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042 | ||| ||| | ||||| | ||| |||||||||||||| || ||| || || | ||| Sbjct 4394030 AAAAAATCTTGGGACCCATTAGCATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTG 4393972 Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102 | || |||| |||| | ||||||||||||||| | |||||||||||| |||| Sbjct 4393971 GCATTTGTGG-ATCCCTTGGTAGCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACG 4393913 Query 7103 CGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAAC 7162 ||||| || || || ||||||||| | || ||| |||| || ||||| || |||| Sbjct 4393912 CGTTTGAATGTGAGTAGAGGAAATTCGGCTCGGAGGCTGTAGCGCGCCTGCATGGTGAAC 4393853 Query 7163 ACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGC 7222 || || | || || || || | |||||| ||||| | |||| | ||||| || Sbjct 4393852 ACCGACTGCGTGCCGGTGCCCGCGCGGTCCTTCTTCCTGAAGCCGCAGCGCAGGATGTGC 4393793 Query 7223 GCCACCTGATACAGATACTGCCACTCCCCATGCG 7256 ||||||| ||| || ||| ||| || |||| Sbjct 4393792 TCCACCTGGCGCAGGTAATGCGGCTCGCCCTGCG 4393759 >seq15 Length=38784467 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||| |||||||| || || || || |||||||| ||||| || | Sbjct 20806135 GACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAG 20806194 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | || || ||||||||||||| |||||||||| | |||||||| Sbjct 20806195 GCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACCACGTAGAA 20806254 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| |||| ||||| || || || ||||||||||| || || Sbjct 20806255 CTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAGAGGAAGGTC 20806299 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||||||||||| || || || ||||| |||| ||||| |||||||| | |||| Sbjct 20806299 GACCTTCCTCTGATGGCACTGCCTCCCTGCCATGCCCTGTGCCAGTTCTACGTGGTGAAT 20806240 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||| ||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 20806239 GGGGAGTTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTC 20806180 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || || |||||||| ||||||||||| || ||| Sbjct 20806179 AACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACGTC 20806135 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||||| ||| || || | Sbjct 20809582 TAGTCTGCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCTTGT 20809641 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| |||| ||||| ||||| ||||| | ||| |||||||||||| Sbjct 20809642 CGTGCAGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCATCCCAGATCTTC 20809701 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 20809702 ACTCCCTTGGATGACAGTTCTTTTGCATTTGTGG 20809735 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||||||||||||| ||| | ||||| | Sbjct 20809735 CCACAAATGCAAAAGAACTGTCATCCAAGGGAGTGAAGATCTGGGATGCTAATGGGTCCC 20809676 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| ||||| |||| ||| ||| | | || | || || ||| ||||||| || | Sbjct 20809675 GAGATTTTCTCGACAGCTTGGGATTCTCTGCACGACAAGAAGGGGACCTGGGCCCAGTTT 20809616 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 20809615 ATGGTTTCCAGTGGAGGCATTTTGGGGCAGACTA 20809582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| |||||||| | ||| |||||||| |||||||| || | |||||| Sbjct 20807209 TTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTGTCA 20807268 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 || || | |||||||||||| |||| |||||||| || || Sbjct 20807269 ATTACTTTTTGCAGCTGGTCCACTCCTTGTCCCGAGTAATC 20807309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || |||||||| |||| |||||||||||| | || || |||||| | || ||| Sbjct 20807309 GATTACTCGGGACAAGGAGTGGACCAGCTGCAAAAAGTAATTGACACCATCAAAACCAAC 20807250 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||| |||||||| ||| | |||||||| |||||||| || Sbjct 20807249 CCTGACGACAGAAGAATCATCATGTGCGCCTGGAACCCAAA 20807209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448201335454560