Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq189 183 3e-41 seq34 168 6e-37 seq15 113 4e-20 seq4 86.0 5e-12 >seq189 Length=1716036 Score = 183 bits (202), Expect = 3e-41 Identities = 197/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||||| | || |||| | ||||| || ||||| ||| || || ||||||||||| Sbjct 666468 AAACGTCCCAGGAAGCCTTGATTGTGACTTGGCAGAAAAAGAAGGCTGTAAGCCCAGAAA 666527 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||||| || || ||||||||||||| || ||||| || || || || | Sbjct 666528 ACATGGTCACTTACAGCAAGAACCACGGGGTTGTGGTCCAGCCCGCCTATAAGGACAGGG 666587 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 ||||||| || || || ||||| | ||| |||| || |||||||||||||| ||||||| Sbjct 666588 TGAACATCACCGAACTGGGACTCCGGAACTCAACCATCACCTTCTGGAACACGACATTGG 666647 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | || || || || |||| |||| | || || || ||||| ||||||||||| ||||||| Sbjct 666648 AGGACGAGGGCTGTTACATGTGTCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGAA 666707 Query 1510 TAGGGTGTCTAACCCTTTTTG 1530 | || || ||||||| || Sbjct 666708 CATCCTGCCTCACCCTTTATG 666728 >seq34 Length=25388739 Score = 168 bits (186), Expect = 6e-37 Identities = 371/549 (68%), Gaps = 14/549 (3%) Strand=Plus/Plus Query 2144 ACTGTATTGCA-----GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCC 2198 |||| |||||| || || || | || ||||||||||| || || || ||||||| Sbjct 338056 ACTGAATTGCATCGTTGCCGTGTCCCAGAACATGGGCATTGGCAAAAACGGGGAACTGCC 338115 Query 2199 ATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACAT--CTTCTTCCACT 2256 ||||| || || | || || || || |||| || | ||||||| | ||||| Sbjct 338116 CTGGCCCCCGCTCAGGAACGAGTTCAAGTATTTCCAGAGAATGACACAACCTCTTCAGTG 338175 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || || ||||| || || || ||||| || |||| | | | Sbjct 338176 GAAGGTAAACAGAATCTGGTGATCATGGGTAGGAAAACCTGGTTCTCCATTCC--TGAGA 338233 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | || || || ||||||| ||| |||||||||||| | || || || |||| Sbjct 338234 AGGATCGACCCTTAAAGGACAGAATTAATACAGTTCTCAGTAGAGAACTCAAGGACCCAC 338293 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | | | || || | | | || | || Sbjct 338294 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGGTGACACTTTACAGCTCATTGAACAAC 338353 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 | || || | | | || || | | | ||||| | | || || || || ||| ||| Sbjct 338354 C-GAGCTAGCAAATAAAGTAGACATGGTGTGGATCGTCAGAGGCAGTTCGGTTTATAAGG 338412 Query 2495 AGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| || | | | | | | || |||||| | |||||||| | ||| ||||| Sbjct 338413 AAGCCATGGACCA-ACCAGGACATCTGAAACTGTTTGTGACAAGGATCATTCAAGAATTT 338471 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| |||| || ||||| ||| || | |||||||||| || | |||| Sbjct 338472 GAAAGTGACACATTTTTTCCAGATATTGATATGGAGAAATACAAACTTCTCCCAGAATAC 338531 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| |||| || || || ||| | || |||| ||||||||||| ||||| Sbjct 338532 CCAGGTGTTCTTTCTGAGGTCCAGGAGGAAGAAGGCATTAAGTACAAATTTGAAGTATAT 338591 Query 2674 Gaaaaaaaa 2682 ||||| ||| Sbjct 338592 GAAAAGAAA 338600 >seq15 Length=38784467 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||||| || ||||| ||||||||||| || || || ||||||||| Sbjct 8038814 GTGGTGGAGGAGCTGTTCCGGGACGGGGTGAACTGGGGGCGGATCGTGGCCTTCTTTGAG 8038755 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 8038754 TTCGGCGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCACCCCTGGTGGACAAC 8038695 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 8038694 ATCGCCCTGTGGATGACTGA 8038675 >seq4 Length=53591480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | ||||| ||||| || || || ||||| || |||| | | ||| | Sbjct 52663244 AAACAGAATCTGGTAATCATGGGTAGGAAAACCTGGTTCTCCATTCC--TGAGAAGAATC 52663301 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | || || || ||||||| ||| | |||||||||||| | || || || ||||||| | Sbjct 52663302 GACCCTTCAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGACCCACCACAAG 52663361 Query 2381 GGGCTCACTTTGTTGCAAAAAGT 2403 | ||||| ||| |||| | |||| Sbjct 52663362 GAGCTCATTTTCTTGCCAGAAGT 52663384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414421749450472