Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq189 183 3e-41
seq34 168 6e-37
seq15 113 4e-20
seq4 86.0 5e-12
>seq189
Length=1716036
Score = 183 bits (202), Expect = 3e-41
Identities = 197/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329
||||| | || |||| | ||||| || ||||| ||| || || |||||||||||
Sbjct 666468 AAACGTCCCAGGAAGCCTTGATTGTGACTTGGCAGAAAAAGAAGGCTGTAAGCCCAGAAA 666527
Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389
|||||| ||||| || || ||||||||||||| || ||||| || || || || |
Sbjct 666528 ACATGGTCACTTACAGCAAGAACCACGGGGTTGTGGTCCAGCCCGCCTATAAGGACAGGG 666587
Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449
||||||| || || || ||||| | ||| |||| || |||||||||||||| |||||||
Sbjct 666588 TGAACATCACCGAACTGGGACTCCGGAACTCAACCATCACCTTCTGGAACACGACATTGG 666647
Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509
| || || || || |||| |||| | || || || ||||| ||||||||||| |||||||
Sbjct 666648 AGGACGAGGGCTGTTACATGTGTCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGAA 666707
Query 1510 TAGGGTGTCTAACCCTTTTTG 1530
| || || ||||||| ||
Sbjct 666708 CATCCTGCCTCACCCTTTATG 666728
>seq34
Length=25388739
Score = 168 bits (186), Expect = 6e-37
Identities = 371/549 (68%), Gaps = 14/549 (3%)
Strand=Plus/Plus
Query 2144 ACTGTATTGCA-----GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCC 2198
|||| |||||| || || || | || ||||||||||| || || || |||||||
Sbjct 338056 ACTGAATTGCATCGTTGCCGTGTCCCAGAACATGGGCATTGGCAAAAACGGGGAACTGCC 338115
Query 2199 ATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACAT--CTTCTTCCACT 2256
||||| || || | || || || || |||| || | ||||||| | |||||
Sbjct 338116 CTGGCCCCCGCTCAGGAACGAGTTCAAGTATTTCCAGAGAATGACACAACCTCTTCAGTG 338175
Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316
|| ||||||||| | || || ||||| || || || ||||| || |||| | | |
Sbjct 338176 GAAGGTAAACAGAATCTGGTGATCATGGGTAGGAAAACCTGGTTCTCCATTCC--TGAGA 338233
Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374
|| | | || || || ||||||| ||| |||||||||||| | || || || ||||
Sbjct 338234 AGGATCGACCCTTAAAGGACAGAATTAATACAGTTCTCAGTAGAGAACTCAAGGACCCAC 338293
Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434
||| || ||||| ||| |||| | |||| | | | || || | | | || | ||
Sbjct 338294 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGGTGACACTTTACAGCTCATTGAACAAC 338353
Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494
| || || | | | || || | | | ||||| | | || || || || ||| |||
Sbjct 338354 C-GAGCTAGCAAATAAAGTAGACATGGTGTGGATCGTCAGAGGCAGTTCGGTTTATAAGG 338412
Query 2495 AGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553
| ||| || | | | | | | || |||||| | |||||||| | ||| |||||
Sbjct 338413 AAGCCATGGACCA-ACCAGGACATCTGAAACTGTTTGTGACAAGGATCATTCAAGAATTT 338471
Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613
||| |||| |||| || ||||| ||| || | |||||||||| || | ||||
Sbjct 338472 GAAAGTGACACATTTTTTCCAGATATTGATATGGAGAAATACAAACTTCTCCCAGAATAC 338531
Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673
|||||||||| |||| || || || ||| | || |||| ||||||||||| |||||
Sbjct 338532 CCAGGTGTTCTTTCTGAGGTCCAGGAGGAAGAAGGCATTAAGTACAAATTTGAAGTATAT 338591
Query 2674 Gaaaaaaaa 2682
||||| |||
Sbjct 338592 GAAAAGAAA 338600
>seq15
Length=38784467
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||| ||||| || ||||| ||||||||||| || || || |||||||||
Sbjct 8038814 GTGGTGGAGGAGCTGTTCCGGGACGGGGTGAACTGGGGGCGGATCGTGGCCTTCTTTGAG 8038755
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| || || || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 8038754 TTCGGCGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCACCCCTGGTGGACAAC 8038695
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 8038694 ATCGCCCTGTGGATGACTGA 8038675
>seq4
Length=53591480
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/143 (74%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320
||||||||| | ||||| ||||| || || || ||||| || |||| | | ||| |
Sbjct 52663244 AAACAGAATCTGGTAATCATGGGTAGGAAAACCTGGTTCTCCATTCC--TGAGAAGAATC 52663301
Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380
| || || || ||||||| ||| | |||||||||||| | || || || ||||||| |
Sbjct 52663302 GACCCTTCAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGACCCACCACAAG 52663361
Query 2381 GGGCTCACTTTGTTGCAAAAAGT 2403
| ||||| ||| |||| | ||||
Sbjct 52663362 GAGCTCATTTTCTTGCCAGAAGT 52663384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414421749450472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |