Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq19 233 2e-56 seq15 158 1e-33 seq4 82.4 6e-11 >seq19 Length=34640225 Score = 233 bits (258), Expect = 2e-56 Identities = 392/568 (69%), Gaps = 8/568 (1%) Strand=Plus/Minus Query 29692 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29751 ||| ||||| || || ||| || || ||| | | || ||||||| ||||| || | Sbjct 4394423 GTGCACAAAGTCACC---TTC-AGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368 Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811 |||||||||||||| ||| || | || || |||||||| |||||||||||||| ||||| Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308 Query 29812 GCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGC 29871 ||| || |||| || | ||| || | | | || | |||||||| ||||| || || Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248 Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| ||| | |||||| ||||||||||| |||| | |||| | ||||| || ||||| Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188 Query 29932 GTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGN 29991 | | ||||| || | | | ||||||| || ||||| || ||||||| |||| Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128 Query 29992 NNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30051 ||||||||||||||||||| || ||||| || |||| Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068 Query 30052 GTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30110 | | || |||| | |||| ||| || |||| ||||| ||| ||| || || | Sbjct 4394067 GACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009 Query 30111 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30170 | ||||||||||| || |||| || || | ||||| |||||||| || || | Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGCATTTGTGGATCC-CTTGGTA 4393951 Query 30171 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230 ||||||||||||||||| ||| ||||||| || || | ||| ||||| || |||| Sbjct 4393950 GCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGAA 4393891 Query 30231 ACTGTCCCTTGAGGCCGTACCTCGCCTG 30258 | | | ||||| ||| | |||||| Sbjct 4393890 ATTCGGCTCGGAGGCTGTAGCGCGCCTG 4393863 >seq15 Length=38784467 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||||||| || |||||||| ||||| || | |||||||||||||| |||||| Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || | ||| || | | Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| |||| ||||||||| ||||| || ||||| ||| Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAGA 20806291 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAA 30075 ||||||||||||||||| || || || || |||||||| || |||| | |||| ||| Sbjct 20809594 AAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCTTGTC-GTGCAGAGAA 20809652 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||| | ||| |||| ||| || || || ||||||||||| || ||||| Sbjct 20809653 TCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCATCCCAGATCTTCACTCCCTTGGA 20809712 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||||| || Sbjct 20809713 TGACAGTTCTTTTGCATTTGTGGATCC 20809739 >seq4 Length=53591480 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 52663369 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 52663310 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | |||| |||||| || || ||||||||||| || || |||||||| || |||| || Sbjct 52663309 GAAGGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATT 52663250 Query 114382 CTGCTTACCT 114391 ||| |||||| Sbjct 52663249 CTGTTTACCT 52663240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406109253657628