Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq19 233 2e-56
seq15 158 1e-33
seq4 82.4 6e-11
>seq19
Length=34640225
Score = 233 bits (258), Expect = 2e-56
Identities = 392/568 (69%), Gaps = 8/568 (1%)
Strand=Plus/Minus
Query 29692 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29751
||| ||||| || || ||| || || ||| | | || ||||||| ||||| || |
Sbjct 4394423 GTGCACAAAGTCACC---TTC-AGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368
Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811
|||||||||||||| ||| || | || || |||||||| |||||||||||||| |||||
Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308
Query 29812 GCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGC 29871
||| || |||| || | ||| || | | | || | |||||||| ||||| || ||
Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248
Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931
||| ||| | |||||| ||||||||||| |||| | |||| | ||||| || |||||
Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188
Query 29932 GTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGN 29991
| | ||||| || | | | ||||||| || ||||| || ||||||| ||||
Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128
Query 29992 NNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30051
||||||||||||||||||| || ||||| || ||||
Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068
Query 30052 GTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30110
| | || |||| | |||| ||| || |||| ||||| ||| ||| || || |
Sbjct 4394067 GACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009
Query 30111 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30170
| ||||||||||| || |||| || || | ||||| |||||||| || || |
Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGCATTTGTGGATCC-CTTGGTA 4393951
Query 30171 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230
||||||||||||||||| ||| ||||||| || || | ||| ||||| || ||||
Sbjct 4393950 GCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGAA 4393891
Query 30231 ACTGTCCCTTGAGGCCGTACCTCGCCTG 30258
| | | ||||| ||| | ||||||
Sbjct 4393890 ATTCGGCTCGGAGGCTGTAGCGCGCCTG 4393863
>seq15
Length=38784467
Score = 158 bits (174), Expect = 1e-33
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||||||| || |||||||| ||||| || | |||||||||||||| ||||||
Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| |||||||||||||| |||||||| || | ||| || | |
Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| |||| ||||||||| ||||| || ||||| |||
Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAGA 20806291
Score = 87.8 bits (96), Expect = 1e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAA 30075
||||||||||||||||| || || || || |||||||| || |||| | |||| |||
Sbjct 20809594 AAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCTTGTC-GTGCAGAGAA 20809652
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| |||| | ||| |||| ||| || || || ||||||||||| || |||||
Sbjct 20809653 TCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCATCCCAGATCTTCACTCCCTTGGA 20809712
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| || ||||| | |||||||| ||
Sbjct 20809713 TGACAGTTCTTTTGCATTTGTGGATCC 20809739
>seq4
Length=53591480
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || || ||||| |||| || | ||||| |
Sbjct 52663369 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 52663310
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| |||| |||||| || || ||||||||||| || || |||||||| || |||| ||
Sbjct 52663309 GAAGGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATT 52663250
Query 114382 CTGCTTACCT 114391
||| ||||||
Sbjct 52663249 CTGTTTACCT 52663240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406109253657628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |