Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq57 224 8e-54 seq6 154 1e-32 seq63 143 2e-29 seq81 136 3e-27 seq175 129 5e-25 seq171 114 1e-20 seq150 93.3 4e-14 seq56 93.3 4e-14 seq70 91.5 1e-13 seq83 89.7 4e-13 >seq57 Length=15126812 Score = 224 bits (248), Expect = 8e-54 Identities = 586/874 (67%), Gaps = 31/874 (4%) Strand=Plus/Minus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || |||| ||||| || ||||||| |||||| | ||||| || ||||| Sbjct 10750291 TACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGAAGTCAAA 10750232 Query 4331 CGGATTAGTTGCGTTGTAA-TGTTTTTCACAC---TTTAGAGCTACAAGCAATCGGTCAG 4386 || || | | || || | || || | || ||| ||| | |||| | ||| | Sbjct 10750231 TGGGTTTTCTACTCTGAAAATCTTGTTAAAACCCATTTCCAGC-ATAAGC---CTGTCTG 10750176 Query 4387 CTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA 4446 | |||||||| || | ||| |||| | ||| || |||||||| || ||||||| | Sbjct 10750175 CCACAAATTCAATGTTCTGCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACAGGCA 10750116 Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTT 4506 || | ||| | ||||| | |||||| | || || | ||||| || || | | Sbjct 10750115 AGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCATTGACAATTATTTCCTTGACTC 10750056 Query 4507 TAT-CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | || || ||||||| | ||| | || |||| | || | ||||||||| || Sbjct 10750055 ACTACTCTA-ATGGTTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAATCACA-TGT 10749998 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 ||||| || |||| ||||| || || | ||||| || | || ||||| | || || Sbjct 10749997 AAACCCTCATCTCGACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTCC-CTG 10749939 Query 4626 TTT-TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684 ||| || ||||||||||| | ||||| || |||||||||| | ||| | || || Sbjct 10749938 TTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAAAGATTT---CTTTCGCAGCAGC 10749882 Query 4685 AAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCC 4743 ||| ||||| | | || | | ||| |||| || |||||| | | | Sbjct 10749881 AAAAGCTACAACATGTTCTCCATAGGTAGCCT-CTTTATCCACAATCCAACACAGGGTCA 10749823 Query 4744 AGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTT 4800 || || || ||| || || || || | | || || || || | | | |||| Sbjct 10749822 CGTCTGCCTTCTTCATA---CAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTCCCTTT 10749766 Query 4801 -TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||| | || | ||| | ||| |||| || || || || ||||| |||||||||| Sbjct 10749765 CTTTGACATC--TTTTG--TGTAAATGTCAATAAGGAGACTGTACATCCCAGAATGTATG 10749710 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 || || || ||||| || || || || || || | |||||||| | ||||||||| | Sbjct 10749709 TTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTGG 10749650 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 | ||||| || || | |||||| ||||||||||| |||||||| ||||| || |||| | Sbjct 10749649 CTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGGCAGCAAAGAAAGCCAGA 10749590 Query 4980 ACATGAGATATAAAGTA--CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTT 5037 || ||||||||||||| | ||| |||||||| || || |||||| | | || | Sbjct 10749589 ACGAGAGATATAAAGTATCTTTTTCTTCAGGCTTCAGGGCTTCCCAGTGCTGAACGTCCT 10749530 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACC 5097 | | | ||| || | ||| | ||||| || || || ||||| |||||||| || Sbjct 10749529 TGGAAAGATCTACCACCTCAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTACATCTGCC 10749470 Query 5098 AAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | |||||| | || || || |||| || ||||| Sbjct 10749469 AGATATCATGCTATTGCATAGGAAAGATAACAAA 10749436 >seq6 Length=52350410 Score = 154 bits (170), Expect = 1e-32 Identities = 411/620 (66%), Gaps = 15/620 (2%) Strand=Plus/Minus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 ||| || |||||||| || ||||| |||| | || || ||||||| | |||| Sbjct 1187316 GTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTACAATTTGTTCCAATGAGCTTCAC 1187257 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||| | || | ||| || | ||| | |||||| | || || | ||||| || || Sbjct 1187256 AGGCAAGGCTTCTGTGAAGATCTCCTATTCTATCCTGACAGCATTGACAATTATTTCCTT 1187197 Query 4502 TATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACA 4561 | | | | |||||||| | ||| |||| |||| | || ||||||||||| Sbjct 1187196 GACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTTGAACATCAGGCAGGCAAAATCACA 1187137 Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || | ||| || ||| ||||| || || || ||||| || | || ||||| | || Sbjct 1187136 GTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCC 1187077 Query 4622 TCTCTTT-TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680 || ||| | ||||| ||| | | ||||| || |||||||||| || ||||| || | Sbjct 1187076 -CTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGATGATTCCTTCCACAG 1187018 Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACGAGC-TGGCTTTGTCTTTAATCCATTTTAAT 4739 | |||| ||||| | | | | | | | |||||||| |||||| || Sbjct 1187017 CAGCAAGAGCTAC-AGCATGTTCTCCATTGGTCGCCTCTTTGTCTGCAATCCAACGCAAG 1186959 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT---AAATAATTTA 4796 |||| || || | ||| || | || || | || || || || |||| Sbjct 1186958 GCCCCGT---CTGCCTCCTTCACAGGAAGCATCGTTTCAATGGCATTGACAAGGAATTCC 1186902 Query 4797 CTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 |||| || ||| |||| |||| ||||||| | || || || ||||| |||||| | Sbjct 1186901 CTTTCTT----TGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTACATCTCAGAACG 1186846 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| ||||| || ||| | || || || || || | ||||||||| | ||||||||| Sbjct 1186845 TATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGTAATTTGAACTTC 1186786 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | | ||||| || | |||||||| || ||| | | |||||||| |||||||| || Sbjct 1186785 TTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGCAGCAAAAAAAGC 1186726 Query 4976 CAAAACATGAGATATAAAGT 4995 || || |||||| |||||| Sbjct 1186725 CAGGACGTGAGATGTAAAGT 1186706 >seq63 Length=13740492 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||||| ||||| || || | ||| | || ||||| ||| || ||||||| | Sbjct 12331770 GTGAAAACCGGCATTCAGATAGCTGTTCCTCCTGGATGCTATGGAAGAGTAGCTCCACGC 12331829 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| || |||||||| || || || || || |||||||||||| ||| ||| Sbjct 12331830 TCTGGCTTGGCTGTAAAACACTTCATTGATGTAGGAGCTGGTGTTATAGATGAAGATTAT 12331889 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 |||||||| ||||| |||| |||||||||||||| |||| | | | | ||||| | Sbjct 12331890 AGAGGAAATGTTGGTTTTGTATTGTTTAATTTTGG-GAAAGAGAAGTTTGAAGTAAAACA 12331948 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||| || | || || || ||||| ||| Sbjct 12331949 GGGCGATCGGATTGCACAGCTTATTTGTGAA 12331979 >seq81 Length=11848649 Score = 136 bits (150), Expect = 3e-27 Identities = 159/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || |||||| | ||||| || || | ||| | || |||| ||| || ||||||| | Sbjct 872198 GTGAAAACCAACATTCAGATGGCTGTTCCTCCTGGATGCTT-GGAAGAGTAGCTCCACGC 872256 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| || |||||||| || || || || ||||||||||||||| ||| ||| Sbjct 872257 TCTGGCTTGGCTGTAAAACACTTCATTGATGTAGGAGCGGGTGTTATAGATGAAGATTAT 872316 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 |||||||| ||||| ||| ||||||||||||| |||| | | | | | ||||| | Sbjct 872317 AGAGGAAATGTTGGTGGTGTACTGTTTAATTTTGG-GAAAGAGAAGTCTGAAGTAAAACA 872375 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||| || | || || || ||||| ||| Sbjct 872376 GGGCGATCGGATTGCACAGCTTATTTGTGAA 872406 >seq175 Length=2612143 Score = 129 bits (142), Expect = 5e-25 Identities = 274/406 (67%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||||| || ||||| | |||||||||||||| | | | ||| | || | |||| Sbjct 1473361 ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTA 1473302 Query 4788 AATAATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 ||||| ||| | | |||| ||| || |||| ||||| |||| ||| || || Sbjct 1473301 AATAAAA-ACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATAT 1473243 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || ||| || || ||||| ||| || || || || ||| |||| || Sbjct 1473242 CTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAAC 1473183 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || || | || | ||||| || ||||| ||||| || | || |||| ||| Sbjct 1473182 GTGCACGTCCT----AATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGC 1473127 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 |||||| || || | || || ||||| | || | || || ||||| ||||||| Sbjct 1473126 AAAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTA 1473067 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 || | ||| || | ||| |||| || || | ||||| || || | | |||| || Sbjct 1473066 AGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTT 1473007 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAAT 5132 ||||| |||||||||||| ||||| || |||| ||||||||| Sbjct 1473006 ATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq171 Length=3042471 Score = 114 bits (126), Expect = 1e-20 Identities = 152/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835 |||| || |||| | || | ||| | || |||| ||| || ||| ||| | |||| Sbjct 1173712 AAACAGACTTTCAGAGAGCTGTTCCTCCTGGATGCTT-GGAAGAGTAGTTCCACGCTCTG 1173654 Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895 | ||||| || |||||||| |||| || || || |||||||||||| ||| ||||||| Sbjct 1173653 GCTTGGCTGTAAAACACTTCATCGGTGTAGGAGCTGGTGTTATAGATGAAGATTATAGAG 1173594 Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAAGGGC 31954 |||| ||||| |||| ||| |||||||||| |||| | | | | ||||| ||||| Sbjct 1173593 GAAATGTTGGTGTTGTATTGCTTAATTTTGG-GAAAGAGAAGTTTGAAGTAAAACAGGGC 1173535 Query 31955 GATAGGGTAGCTCAACTAATTTGCGAA 31981 ||| || | || || || ||||| ||| Sbjct 1173534 GATTGGATTGCACAGCTTATTTGTGAA 1173508 >seq150 Length=4332817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835 |||| | ||||| || || | || | || ||||| ||| || ||||||| | |||| Sbjct 4074355 AAACAAACATTCAGATAGCTGTTCCCCCTGGATGCTATGGAAGAGTAGCTCCACGCTCTG 4074296 Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895 | || || || ||||| || || || | || || ||| |||||||| | | ||||||| Sbjct 4074295 GCTTTGCTGTAAAACATTTCATTGATGCAGGAGCTGGTCTTATAGATGAAAATTATAGAG 4074236 Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAA 31931 |||| |||| ||||| ||||||||||||| |||| Sbjct 4074235 GAAATGTTGATATTGTACTGTTTAATTTTGG-GAAA 4074201 >seq56 Length=15139244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 9255612 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 9255556 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 9255555 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 9255496 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 9255495 ATAAGTCAAC 9255486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 9286024 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 9285965 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 9285964 ATAAAATCAAAAGGATT 9285948 >seq70 Length=13219966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| ||||||| || || | ||| | || ||||| ||| || ||||| || | Sbjct 2487303 GTGAAAAC--ATATTCAGATAGCTGTTCCTCCTGGATGCTATGGAAGAGTAGCTTCTGCA 2487360 Query 31832 -TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 |||| ||||| | |||| ||| || | || || || ||||||| |||| ||| || Sbjct 2487361 CTCTGACTTGGCTATAAAACCCTTCATTCATGTAGGAGCTGGTGTTAGAGATGAAGATTA 2487420 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAA 31931 |||||| || ||||| |||| ||||||||||||| |||| Sbjct 2487421 TAGAGGGAATGTTGGTGTTGTACTGTTTAATTTTGG-GAAA 2487460 >seq83 Length=10591344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||||||||| || || || || ||||| || |||||||| ||||| || ||| Sbjct 7358134 TCTTTAATATAAGTGTCAATAAGGAGACTGTACATCTCGGAATGTATGTTTTCCATGGCA 7358193 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | ||||||||| Sbjct 7358194 ATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTC 7358237 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| |||||||| || |||||||| ||||| || |||| ||| ||||||||| Sbjct 7359008 ACCAAGTTTTCATTTACTATGCCATCACTGGCAGCAAAGAAAGCCAGAACGTGAGATATA 7359067 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || || ||| ||||| || || ||| |||||| Sbjct 7359068 AAATATCTTTCCTCAGGTTTCAGGGTTTCCCAGTG 7359102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426992879539034