Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq19 235 4e-57 seq15 134 1e-26 >seq19 Length=34640225 Score = 235 bits (260), Expect = 4e-57 Identities = 381/541 (70%), Gaps = 8/541 (1%) Strand=Plus/Minus Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 ||| ||||| || || ||| || || ||| | | || ||||||| ||||| || | Sbjct 4394423 GTGCACAAAGTCACC---TTC-AGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||||||||||||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308 Query 27306 ACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGC 27365 || || |||| |||| || || | | | || | ||| |||| ||||| || || Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248 Query 27366 CATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 27425 ||| || | |||||| |||||||||||||||| | |||| | ||||| || ||||| Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188 Query 27426 GTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTAC 27485 | | ||||| || | | | ||||||| || ||||| || ||||||| ||| Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128 Query 27486 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 ||| || ||| || | |||||||||||||| ||||| || ||||| || |||| Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068 Query 27546 GTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 | | || |||| | |||| ||| || |||| ||||| ||| ||| || || | Sbjct 4394067 GACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009 Query 27605 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 27664 | ||||||||||| || |||| || || | ||||| |||||||| || || | Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGCATTTGTGGATCC-CTTGGTA 4393951 Query 27665 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 ||||||||||||||||| ||| ||||||| || || | ||| ||||| || |||| Sbjct 4393950 GCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGAA 4393891 Query 27725 A 27725 | Sbjct 4393890 A 4393890 >seq15 Length=38784467 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| ||||| || || | ||| |||| Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAG 20806290 Score = 95.1 bits (104), Expect = 9e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||||||| Sbjct 20809572 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 20809631 Query 27549 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 || |||| | |||| ||| ||| |||| | ||| |||| ||| || || || | Sbjct 20809632 CCCTTCTTGTC-GTGCAGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCAT 20809690 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||| || ||||| || || ||||| | |||||||| || Sbjct 20809691 CCCAGATCTTCACTCCCTTGGATGACAGTTCTTTTGCATTTGTGGATCC 20809739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369458122284638