Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq116 136 3e-27
seq58 132 3e-26
seq4 132 3e-26
seq93 129 4e-25
seq7 127 1e-24
seq3 122 6e-23
seq73 118 8e-22
seq31 114 9e-21
seq77 113 3e-20
seq32 113 3e-20
seq133 111 1e-19
seq57 89.7 4e-13
seq6 86.0 5e-12
seq1 86.0 5e-12
>seq116
Length=7179089
Score = 136 bits (150), Expect = 3e-27
Identities = 173/233 (74%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | ||||||||| || ||| |||||| ||||||||||| ||
Sbjct 4848360 CATCCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 4848419
Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
| | || | ||| | || ||||||||||| ||||||||||||| | |||||| || |
Sbjct 4848420 AGACAAGGT-GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAG 4848478
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284
|| | || || || ||| ||||| ||| | | |||| | |||||||| ||
Sbjct 4848479 GGGGGATGCCCTCTTTGTCCTGGATCTT-TGCCTTGACGTTCTCGATGGTGTCACTGGGC 4848537
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct 4848538 TCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590
>seq58
Length=14941408
Score = 132 bits (146), Expect = 3e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||| || || ||||| ||| || |||||| || ||||| || | | |||
Sbjct 5525687 AGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGC 5525746
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || ||||||||||| | ||||||||| | ||| | ||||||
Sbjct 5525747 CCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 5525806
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | |||
Sbjct 5525807 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 5525866
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| ||||| |||||||| || |||||
Sbjct 5525867 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904
>seq4
Length=53591480
Score = 132 bits (146), Expect = 3e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||| ||| || ||||| ||| |||||||||||| ||||| || | | |||
Sbjct 13584069 AGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGC 13584010
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
|| || ||||| ||||| || |||||||||| | ||||||||| | ||| | ||||||
Sbjct 13584009 TCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 13583950
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| ||||| | || ||| || || | |||
Sbjct 13583949 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTG 13583890
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||| | ||||| ||||| || || |||||
Sbjct 13583889 ATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852
>seq93
Length=9247444
Score = 129 bits (142), Expect = 4e-25
Identities = 164/222 (74%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177
||||||| || || ||||| ||| ||||||||| || ||||| || | | || ||
Sbjct 8914043 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGC 8914102
Query 44178 GC-TCGTCGT-CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACC 44235
| || || | |||| ||||| || ||||||||||| | ||||||||| | ||| | ||
Sbjct 8914103 CCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCC 8914162
Query 44236 TTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCAC 44295
|||||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| |
Sbjct 8914163 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 8914222
Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || ||||| ||||| ||||| |||||||| || |||||
Sbjct 8914223 CGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
>seq7
Length=50527172
Score = 127 bits (140), Expect = 1e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||| || || ||||| ||| ||||||||| || ||||| || | | |||
Sbjct 41286051 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGC 41286110
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || ||||||||||| | ||||||||| | ||| | ||||||
Sbjct 41286111 CCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 41286170
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| ||||| | || ||| |||| | ||
Sbjct 41286171 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTG 41286230
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| ||||| |||||||| || |||||
Sbjct 41286231 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
>seq3
Length=68754498
Score = 122 bits (134), Expect = 6e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | || ||||||||| || ||| ||| || ||||||||||||||
Sbjct 7045128 ATGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCA 7045187
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| ||| ||| | || |||||||| || || || | |||| |||||||| ||||
Sbjct 7045188 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGT 7045247
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | |||||||| || ||||| ||| | | | |||||||| || |||
Sbjct 7045248 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCA 7045307
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| ||||| ||||||||||| ||||||||||
Sbjct 7045308 ACCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357
>seq73
Length=12918409
Score = 118 bits (130), Expect = 8e-22
Identities = 165/230 (72%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | |||||||||||| || ||| ||| || ||||||| ||||||
Sbjct 707566 ATGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCA 707508
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| ||| ||| | || ||| |||| || || || || |||| |||||||| |||| |
Sbjct 707507 GAGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGA 707448
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | |||||||| || ||||| ||| | | | |||||||| || |||
Sbjct 707447 GGAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCA 707388
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | || || || || ||||| ||||||||||| |||||||||||
Sbjct 707387 ACCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338
>seq31
Length=29319519
Score = 114 bits (126), Expect = 9e-21
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||| || || |||| ||| ||| ||||| || ||||| || | | |||
Sbjct 3469703 AGTCTCAGTACAAGAAGAAGGGTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGC 3469644
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| | ||||||||||| | ||||||||| | ||| | ||||||
Sbjct 3469643 CCATCTTCCAGTTGCTTTGCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 3469584
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| ||||| | || ||| |||| | |||
Sbjct 3469583 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTG 3469524
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||| | ||||| |||||||| || |||||
Sbjct 3469523 ATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 3469486
>seq77
Length=12540898
Score = 113 bits (124), Expect = 3e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| ||||| ||||| || ||||||||||| | ||||||||| | ||| | ||||||||
Sbjct 3217751 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 3217810
Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302
||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| ||
Sbjct 3217811 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 3217870
Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| ||||| |||||||| || |||||
Sbjct 3217871 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3217905
>seq32
Length=28272660
Score = 113 bits (124), Expect = 3e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| ||||| ||||| || ||||||||||| | ||||||||| | ||| | ||||||||
Sbjct 1753122 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1753181
Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302
||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| ||
Sbjct 1753182 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 1753241
Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| ||||| |||||||| || |||||
Sbjct 1753242 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1753276
>seq133
Length=5915255
Score = 111 bits (122), Expect = 1e-19
Identities = 158/220 (72%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177
||||||| || || ||||| ||| ||||||||| || |||| || | | || ||
Sbjct 1746490 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGACAAAGTATGC 1746549
Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237
| | || ||||| ||||| || ||||||||||| | ||||||||| | ||| | ||||
Sbjct 1746550 CC-CATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTT 1746608
Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297
|||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | |
Sbjct 1746609 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTG 1746668
Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||| || | ||||| ||||| || || |||||
Sbjct 1746669 TGATGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708
>seq57
Length=15126812
Score = 89.7 bits (98), Expect = 4e-13
Identities = 112/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| ||| || |||||||||||||| | || ||| | || |||
Sbjct 1409813 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1409754
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||||||| || | || | |||||||| |||
Sbjct 1409753 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 1409694
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCG 44278
||||| |||| | |||| | |||||||||
Sbjct 1409693 ATCTTGGCCTTC-ACGTTCTCGATGGTGTCG 1409664
>seq6
Length=52350410
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/225 (70%), Gaps = 10/225 (4%)
Strand=Plus/Plus
Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173
|| ||||| | || |||||||| || || || ||||||||||||| | | ||
Sbjct 38909141 CCCCTCAGGCACAGGACCAGGTGCAGGGTAGACTG----TGGATGTTGTAATAAGAGTGT 38909196
Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233
||| | || ||||||| ||| || |||||||| | | |||||| || || | |
Sbjct 38909197 -GGC---CATCTTCCAGCTACTTGCCAGCAAAGATGAGAGCCTGCTGGTCAAGGGGGATA 38909252
Query 44234 CCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTC 44292
|||||||| ||| ||||| ||||| | |||| | ||| |||| || |||||||
Sbjct 38909253 CCTTCCTTATCCTGGATCTT-TGCTTTCACGTTCTTGATGATGTCACTGGGCTCCACCTT 38909311
Query 44293 CACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||| | || || ||||||||||| |||| | |||
Sbjct 38909312 CAGGGTGATGGTCGTGCCAGTCAGGGTCTTCACAGAGATCTACAT 38909356
>seq1
Length=77654946
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGG 44176
||| | || ||||||||| || ||| ||| | |||||| ||||||| | |||| |
Sbjct 73228540 CAGGCGCACCACCAGGTGCAGGGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGT--G 73228483
Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236
| | || ||| ||| || || || | |||| |||||||| |||| || | |||
Sbjct 73228482 CAGCCATCCTCCCGCTATTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCT 73228423
Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCAC 44295
||||| || ||||| ||| | ||| | |||||||| | ||| ||||| |
Sbjct 73228422 TCCTTGTCTTGGATCTTAGCCTTGACA-TTCTTGATGGTGTCACTAGGTTCAACCTCTAG 73228364
Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||| | ||||||||||| |||||||||||
Sbjct 73228363 AGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATTTGCAT 73228322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359942586300066
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