Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq116 136 3e-27 seq58 132 3e-26 seq4 132 3e-26 seq93 129 4e-25 seq7 127 1e-24 seq3 122 6e-23 seq73 118 8e-22 seq31 114 9e-21 seq77 113 3e-20 seq32 113 3e-20 seq133 111 1e-19 seq57 89.7 4e-13 seq6 86.0 5e-12 seq1 86.0 5e-12 >seq116 Length=7179089 Score = 136 bits (150), Expect = 3e-27 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | ||||||||| || ||| |||||| ||||||||||| || Sbjct 4848360 CATCCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 4848419 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | ||| | || ||||||||||| ||||||||||||| | |||||| || | Sbjct 4848420 AGACAAGGT-GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAG 4848478 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || || || ||| ||||| ||| | | |||| | |||||||| || Sbjct 4848479 GGGGGATGCCCTCTTTGTCCTGGATCTT-TGCCTTGACGTTCTCGATGGTGTCACTGGGC 4848537 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 4848538 TCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq58 Length=14941408 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| || || ||||| ||| || |||||| || ||||| || | | ||| Sbjct 5525687 AGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGC 5525746 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || ||||||||||| | ||||||||| | ||| | |||||| Sbjct 5525747 CCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 5525806 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 5525807 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 5525866 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| || ||||| Sbjct 5525867 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq4 Length=53591480 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| ||| || ||||| ||| |||||||||||| ||||| || | | ||| Sbjct 13584069 AGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGC 13584010 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 || || ||||| ||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 13584009 TCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 13583950 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| || || | ||| Sbjct 13583949 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTG 13583890 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||| | ||||| ||||| || || ||||| Sbjct 13583889 ATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq93 Length=9247444 Score = 129 bits (142), Expect = 4e-25 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177 ||||||| || || ||||| ||| ||||||||| || ||||| || | | || || Sbjct 8914043 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGC 8914102 Query 44178 GC-TCGTCGT-CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACC 44235 | || || | |||| ||||| || ||||||||||| | ||||||||| | ||| | || Sbjct 8914103 CCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCC 8914162 Query 44236 TTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCAC 44295 |||||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | Sbjct 8914163 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 8914222 Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||| ||||| ||||| |||||||| || ||||| Sbjct 8914223 CGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq7 Length=50527172 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| || || ||||| ||| ||||||||| || ||||| || | | ||| Sbjct 41286051 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGC 41286110 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || ||||||||||| | ||||||||| | ||| | |||||| Sbjct 41286111 CCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 41286170 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| |||| | || Sbjct 41286171 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTG 41286230 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| || ||||| Sbjct 41286231 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq3 Length=68754498 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||||||| || ||| ||| || |||||||||||||| Sbjct 7045128 ATGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCA 7045187 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| ||| | || |||||||| || || || | |||| |||||||| |||| Sbjct 7045188 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGT 7045247 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||||| || ||||| ||| | | | |||||||| || ||| Sbjct 7045248 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCA 7045307 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| ||||| ||||||||||| |||||||||| Sbjct 7045308 ACCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357 >seq73 Length=12918409 Score = 118 bits (130), Expect = 8e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | |||||||||||| || ||| ||| || ||||||| |||||| Sbjct 707566 ATGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCA 707508 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| ||| | || ||| |||| || || || || |||| |||||||| |||| | Sbjct 707507 GAGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGA 707448 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||||| || ||||| ||| | | | |||||||| || ||| Sbjct 707447 GGAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCA 707388 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || || || ||||| ||||||||||| ||||||||||| Sbjct 707387 ACCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338 >seq31 Length=29319519 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| || || |||| ||| ||| ||||| || ||||| || | | ||| Sbjct 3469703 AGTCTCAGTACAAGAAGAAGGGTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGC 3469644 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| | ||||||||||| | ||||||||| | ||| | |||||| Sbjct 3469643 CCATCTTCCAGTTGCTTTGCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 3469584 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| |||| | ||| Sbjct 3469583 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTG 3469524 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||| | ||||| |||||||| || ||||| Sbjct 3469523 ATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 3469486 >seq77 Length=12540898 Score = 113 bits (124), Expect = 3e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||| ||||| || ||||||||||| | ||||||||| | ||| | |||||||| Sbjct 3217751 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 3217810 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| || Sbjct 3217811 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 3217870 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| ||||| |||||||| || ||||| Sbjct 3217871 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3217905 >seq32 Length=28272660 Score = 113 bits (124), Expect = 3e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||| ||||| || ||||||||||| | ||||||||| | ||| | |||||||| Sbjct 1753122 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1753181 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| || Sbjct 1753182 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 1753241 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| ||||| |||||||| || ||||| Sbjct 1753242 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1753276 >seq133 Length=5915255 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177 ||||||| || || ||||| ||| ||||||||| || |||| || | | || || Sbjct 1746490 AGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGACAAAGTATGC 1746549 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 | | || ||||| ||||| || ||||||||||| | ||||||||| | ||| | |||| Sbjct 1746550 CC-CATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTT 1746608 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 |||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | | Sbjct 1746609 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTG 1746668 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| || | ||||| ||||| || || ||||| Sbjct 1746669 TGATGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 >seq57 Length=15126812 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || |||||||||||||| | || ||| | || ||| Sbjct 1409813 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1409754 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | |||||||| ||| Sbjct 1409753 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 1409694 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCG 44278 ||||| |||| | |||| | ||||||||| Sbjct 1409693 ATCTTGGCCTTC-ACGTTCTCGATGGTGTCG 1409664 >seq6 Length=52350410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/225 (70%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173 || ||||| | || |||||||| || || || ||||||||||||| | | || Sbjct 38909141 CCCCTCAGGCACAGGACCAGGTGCAGGGTAGACTG----TGGATGTTGTAATAAGAGTGT 38909196 Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233 ||| | || ||||||| ||| || |||||||| | | |||||| || || | | Sbjct 38909197 -GGC---CATCTTCCAGCTACTTGCCAGCAAAGATGAGAGCCTGCTGGTCAAGGGGGATA 38909252 Query 44234 CCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTC 44292 |||||||| ||| ||||| ||||| | |||| | ||| |||| || ||||||| Sbjct 38909253 CCTTCCTTATCCTGGATCTT-TGCTTTCACGTTCTTGATGATGTCACTGGGCTCCACCTT 38909311 Query 44293 CACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||| | || || ||||||||||| |||| | ||| Sbjct 38909312 CAGGGTGATGGTCGTGCCAGTCAGGGTCTTCACAGAGATCTACAT 38909356 >seq1 Length=77654946 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGG 44176 ||| | || ||||||||| || ||| ||| | |||||| ||||||| | |||| | Sbjct 73228540 CAGGCGCACCACCAGGTGCAGGGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGT--G 73228483 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 | | || ||| ||| || || || | |||| |||||||| |||| || | ||| Sbjct 73228482 CAGCCATCCTCCCGCTATTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCT 73228423 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCAC 44295 ||||| || ||||| ||| | ||| | |||||||| | ||| ||||| | Sbjct 73228422 TCCTTGTCTTGGATCTTAGCCTTGACA-TTCTTGATGGTGTCACTAGGTTCAACCTCTAG 73228364 Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||| | ||||||||||| ||||||||||| Sbjct 73228363 AGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATTTGCAT 73228322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359942586300066