Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq31 156 6e-33
seq49 138 2e-27
seq54 122 1e-22
>seq31
Length=29319519
Score = 156 bits (172), Expect = 6e-33
Identities = 170/226 (75%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313
|||||||||| || |||| ||| |||| ||||| ||||| ||| |||| | || ||||
Sbjct 1008810 TGGTCTGGAAGAGCCGCTCATCATTCCACTCTGGGTGTTCCTGTCTCAGCATGTCACACA 1008869
Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373
| ||||||||||||| |||||||| |||||||||||||| || ||||| ||||| ||||
Sbjct 1008870 CTCTGTTGTGTTCCCGCAGCCAGATCGTGGCGTACATCATCAGGCCAGGCACCAGACCAA 1008929
Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433
| |||| || || ||||| | |||| || || || | ||||| || ||||| |
Sbjct 1008930 AGACCTCATGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGTAAATCATTT 1008989
Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
|||||| |||| |||| | || || |||| || || |||||
Sbjct 1008990 CCACCTGAGTGTCTCTGACTGTAGGTGGGTACACCTCTCCATCAAT 1009035
Score = 125 bits (138), Expect = 1e-23
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 8352 TGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGC 8411
||| ||| | || ||||| ||||| || || ||||| ||||||||||| || || |
Sbjct 1007057 TGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAAC 1007116
Query 8412 AGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCT 8471
| ||| || |||| || ||||| | |||||| || || || | || | ||| |||
Sbjct 1007117 ATATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCT 1007176
Query 8472 CACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAG 8531
| |||||||| |||| ||||| |||||||| |||| | | | |||||||||| |
Sbjct 1007177 CCCCGAAGATAGCGTCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATTG 1007236
Query 8532 CCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
| || | ||| ||||| ||||| || || ||||| || ||||| |||||||
Sbjct 1007237 CATCAATGTCCCCGTAGAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTCCTG 1007290
>seq49
Length=17435334
Score = 138 bits (152), Expect = 2e-27
Identities = 378/569 (66%), Gaps = 20/569 (4%)
Strand=Plus/Minus
Query 9007 AGTATGGAATTGTTGTAGACGAAGTT--AACGTAGTCATACTTTGTTTTATCAATCTCAA 9064
|||||||| |||||||||| || || || | || | || || || |||| | ||
Sbjct 4663680 AGTATGGAGTTGTTGTAGAGAAACTTTTAAAGCTGTACTCCTG-GTCTT--CAATTTGAA 4663624
Query 9065 ATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGAT 9124
| | ||| |||| || | |||| |||||| | ||||||| || | | || || |
Sbjct 4663623 AGGTATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGT 4663564
Query 9125 TTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGT 9184
| |||||||| || | |||||||| || || || ||| || | || || |
Sbjct 4663563 TCTGGTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGAT 4663504
Query 9185 AGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAA-TGTTGATGGTTTCCCCGATAATG 9243
| || || | ||||| || || | | ||| || | | | |||||| || || | |
Sbjct 4663503 AACCACTCACGTGCTGGACATAGT-CTTCA--ATCAGTCTCGATGGTCTCTCCTGTCAGA 4663447
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCAT-----TCTGGATGTTCTTGTT 9298
||||| | | ||| || || ||| |||| ||||| ||||| || || |||
Sbjct 4663446 ATGAGCCTGCCAGCCTG-AAGAGCCGCTGGTCA-TCCATCCCACTCTGGGTGCTCCTGTC 4663389
Query 9299 TCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCC 9358
|||| | || || |||| ||| |||| |||||||| | |||||||||||| || |
Sbjct 4663388 TCAGCGCGTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGC 4663333
Query 9359 CAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGG 9418
| || ||||| ||||| |||| | || ||||| | |||| || || || | |
Sbjct 4663332 CTGGCACCAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAG 4663273
Query 9419 GAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9478
|||| | ||||| | | || | |||| |||| | || || |||| || || | ||
Sbjct 4663272 GAGGGCAAATCATTTCCGCCCGAGTGTCTCTGACTGTAGGCGGGTACACCTCTCCATGAA 4663213
Query 9479 TCATCTGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCG 9538
| | |||||| |||| |||||| || ||||| || ||||| ||| ||| | ||| |
Sbjct 4663212 TGACCTGATATTTCAATTTTCCATCCTTGAAAAGGCGCAGTTTATGTTGTCTATCTAGAC 4663153
Query 9539 TCTCTCCATAGATGTGGTTGAGATCCACC 9567
| || ||||| |||||| | | ||||||
Sbjct 4663152 TGTCACCATAAATGTGGCTTAAGTCCACC 4663124
Score = 127 bits (140), Expect = 3e-24
Identities = 212/304 (70%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| || | || ||||| |||| ||||| | |||| ||||||||||| |
Sbjct 9420564 GAACACTGAAGGCCGTAAAGGGACAGTCCTTCACGTTATTGCAGATGAGAGACTGAATGG 9420623
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| | || ||||| ||||| || || ||||| ||||||||||| |
Sbjct 9420624 AGGCTGTGTTGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTA-C 9420682
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || ||| || |||| || ||||| | |||| | || || || || |
Sbjct 9420683 TGAGAGATCATATGGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTA 9420742
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| |||| |||||||| || | ||||| |||||||| |||| | | | || |
Sbjct 9420743 CCATGGTCTCCCCGAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATA 9420802
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
|||||| || || | ||| | ||| |||| | | | || ||||| || ||||| ||||
Sbjct 9420803 GCTCCATGGCATCAATGTCCCGGTAGAGGG-CTTCGGATCTGCAGCCATTTCCTTCTCTC 9420861
Query 8583 CTGT 8586
||||
Sbjct 9420862 CTGT 9420865
Score = 105 bits (116), Expect = 1e-17
Identities = 371/569 (65%), Gaps = 29/569 (5%)
Strand=Plus/Plus
Query 9007 AGTATGGAATTGTTGTAGACGAAGTT--AACGTAGTCATACTTTGTTTTATCAATCTCAA 9064
|||||||| |||||||||| || || || | || | || || || |||| | ||
Sbjct 9421062 AGTATGGAGTTGTTGTAGAGAAACTTTTAAAGCTGTACTCCTG-GTCTT--CAATTTGAA 9421118
Query 9065 ATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGAT 9124
| | ||| |||| || | |||| |||||| | ||||||| || | | || || |
Sbjct 9421119 AGGTATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGT 9421178
Query 9125 TTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGT 9184
| |||||||| || | |||||||| || || || ||| || | || || |
Sbjct 9421179 TCTGGTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGAT 9421238
Query 9185 AGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAA-TGTTGATGGTTTCCCCGATAATG 9243
| || || | ||||| || || | | ||| || | | | |||||| || || | |
Sbjct 9421239 AACCACTCACGTGCTGGACATAGT-CTTCA--ATCAGTCTCGATGGTCTCTCCTGTCAGA 9421295
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCAT-----TCTGGATGTTCTTGTT 9298
||||| | | ||| || || ||| |||| ||||| ||||| || || |||
Sbjct 9421296 ATGAGCCTGCCAGCCTG-AAGAGCCGCTGGTCA-TCCATCCCACTCTGGGTGCTCCTGTC 9421353
Query 9299 TCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCC 9358
|||| | || || |||| ||| |||| |||||||| | |||||||||||| || |
Sbjct 9421354 TCAGCGCGTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGC 9421409
Query 9359 CAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGG 9418
| || ||||| ||||| |||| | || ||||| | |||| || || || | |
Sbjct 9421410 CTGGCACCAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGG-GTGTGAG 9421468
Query 9419 GAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9478
|||| | ||||| | | || | |||| ||| | || || |||| || || | ||
Sbjct 9421469 GAGGGCAAATCATTTCCGCCCGAGTGTCTCGGACTGTAGGCGGGTACACCTCTCCATGAA 9421528
Query 9479 TCATCTGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCG 9538
| | |||||| |||| || ||||| || ||||| ||| ||| | ||| |
Sbjct 9421529 TGACCTGATATTTCA--------TCCTTGAAAAGGCGCAGTTTATGTTGTCTATCTAGAC 9421580
Query 9539 TCTCTCCATAGATGTGGTTGAGATCCACC 9567
| || ||||| |||||| | | ||||||
Sbjct 9421581 TGTCACCATAAATGTGGCTTAAGTCCACC 9421609
Score = 93.3 bits (102), Expect = 6e-14
Identities = 163/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 8352 TGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGC 8411
||| ||| | || ||||| ||||| || || ||||| ||||||||||| | | || |
Sbjct 4664109 TGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTA-CTGAGAGATC 4664051
Query 8412 AGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCT 8471
| ||| || |||| || ||||| | |||| | || || || || | ||| |||
Sbjct 4664050 ATATGGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTACCATGGTCT 4663991
Query 8472 CACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAG 8531
| |||||||| || | ||||| |||||||| |||| | | | || ||||||| |
Sbjct 4663990 CCCCGAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATAGCTCCATGG 4663931
Query 8532 CCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
| || | ||| | ||| |||| | | | || ||||| || ||||| | ||||||
Sbjct 4663930 CATCAATGTCCCGGTAGAGGG-CTTCGGCTCTGCAGCCATTTCCTTCTGTCCTGT 4663877
>seq54
Length=15450234
Score = 122 bits (134), Expect = 1e-22
Identities = 176/248 (71%), Gaps = 8/248 (3%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || ||||||||||| || |||||||| ||| |||||
Sbjct 11048675 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGC 11048616
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | |||||||||| |||||| |||| |||||||| |||||||||| |
Sbjct 11048615 TCCGCCTTCAGCAGGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACAGC 11048556
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG--- 9408
| ||||| || | ||| ||||| |||| || || ||||||| || || ||
Sbjct 11048555 ACCAGCCCCGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA----TCTGGTTACGCGG 11048500
Query 9409 -GGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467
|| || | || || ||| ||| |||||| | |||| |||||||| |||||||
Sbjct 11048499 CGGGACGCCCGGCGGGTAGCGCATCAACACCTGAGCCTCTTCCACCGAGGGCGGATACAC 11048440
Query 9468 TTCACCGT 9475
|| ||||
Sbjct 11048439 CTCTCCGT 11048432
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| |||| || || || || || || ||| |||||||| | || || |||||| ||
Sbjct 11057270 AAGCCCATCTCACCACCAAATGTACTTGGCCTCCAGTACTCTGGAGAACAGATGGGATTT 11057211
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
| | ||| || ||||||||||| || ||||| | ||| | || ||||| || ||||||
Sbjct 11057210 CCTAGGAGACCCTTGAGGGAGAAGGGCGCCCCGATCTCTATCATACTCTCCCCAAAGATG 11057151
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| |||||| || |||||| | | | || | ||| | ||||| ||| |||| ||||
Sbjct 11057150 GAGTTGGGCTGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAAGCGTCGATGTCT 11057091
Query 8543 CCGTA 8547
|| ||
Sbjct 11057090 CCATA 11057086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716779143457920
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