Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq31 156 6e-33 seq49 138 2e-27 seq54 122 1e-22 >seq31 Length=29319519 Score = 156 bits (172), Expect = 6e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 |||||||||| || |||| ||| |||| ||||| ||||| ||| |||| | || |||| Sbjct 1008810 TGGTCTGGAAGAGCCGCTCATCATTCCACTCTGGGTGTTCCTGTCTCAGCATGTCACACA 1008869 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | ||||||||||||| |||||||| |||||||||||||| || ||||| ||||| |||| Sbjct 1008870 CTCTGTTGTGTTCCCGCAGCCAGATCGTGGCGTACATCATCAGGCCAGGCACCAGACCAA 1008929 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 | |||| || || ||||| | |||| || || || | ||||| || ||||| | Sbjct 1008930 AGACCTCATGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGTAAATCATTT 1008989 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||| |||| |||| | || || |||| || || ||||| Sbjct 1008990 CCACCTGAGTGTCTCTGACTGTAGGTGGGTACACCTCTCCATCAAT 1009035 Score = 125 bits (138), Expect = 1e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8352 TGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGC 8411 ||| ||| | || ||||| ||||| || || ||||| ||||||||||| || || | Sbjct 1007057 TGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAAC 1007116 Query 8412 AGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCT 8471 | ||| || |||| || ||||| | |||||| || || || | || | ||| ||| Sbjct 1007117 ATATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCT 1007176 Query 8472 CACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAG 8531 | |||||||| |||| ||||| |||||||| |||| | | | |||||||||| | Sbjct 1007177 CCCCGAAGATAGCGTCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATTG 1007236 Query 8532 CCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || | ||| ||||| ||||| || || ||||| || ||||| ||||||| Sbjct 1007237 CATCAATGTCCCCGTAGAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTCCTG 1007290 >seq49 Length=17435334 Score = 138 bits (152), Expect = 2e-27 Identities = 378/569 (66%), Gaps = 20/569 (4%) Strand=Plus/Minus Query 9007 AGTATGGAATTGTTGTAGACGAAGTT--AACGTAGTCATACTTTGTTTTATCAATCTCAA 9064 |||||||| |||||||||| || || || | || | || || || |||| | || Sbjct 4663680 AGTATGGAGTTGTTGTAGAGAAACTTTTAAAGCTGTACTCCTG-GTCTT--CAATTTGAA 4663624 Query 9065 ATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGAT 9124 | | ||| |||| || | |||| |||||| | ||||||| || | | || || | Sbjct 4663623 AGGTATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGT 4663564 Query 9125 TTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGT 9184 | |||||||| || | |||||||| || || || ||| || | || || | Sbjct 4663563 TCTGGTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGAT 4663504 Query 9185 AGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAA-TGTTGATGGTTTCCCCGATAATG 9243 | || || | ||||| || || | | ||| || | | | |||||| || || | | Sbjct 4663503 AACCACTCACGTGCTGGACATAGT-CTTCA--ATCAGTCTCGATGGTCTCTCCTGTCAGA 4663447 Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCAT-----TCTGGATGTTCTTGTT 9298 ||||| | | ||| || || ||| |||| ||||| ||||| || || ||| Sbjct 4663446 ATGAGCCTGCCAGCCTG-AAGAGCCGCTGGTCA-TCCATCCCACTCTGGGTGCTCCTGTC 4663389 Query 9299 TCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCC 9358 |||| | || || |||| ||| |||| |||||||| | |||||||||||| || | Sbjct 4663388 TCAGCGCGTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGC 4663333 Query 9359 CAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGG 9418 | || ||||| ||||| |||| | || ||||| | |||| || || || | | Sbjct 4663332 CTGGCACCAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAG 4663273 Query 9419 GAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9478 |||| | ||||| | | || | |||| |||| | || || |||| || || | || Sbjct 4663272 GAGGGCAAATCATTTCCGCCCGAGTGTCTCTGACTGTAGGCGGGTACACCTCTCCATGAA 4663213 Query 9479 TCATCTGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCG 9538 | | |||||| |||| |||||| || ||||| || ||||| ||| ||| | ||| | Sbjct 4663212 TGACCTGATATTTCAATTTTCCATCCTTGAAAAGGCGCAGTTTATGTTGTCTATCTAGAC 4663153 Query 9539 TCTCTCCATAGATGTGGTTGAGATCCACC 9567 | || ||||| |||||| | | |||||| Sbjct 4663152 TGTCACCATAAATGTGGCTTAAGTCCACC 4663124 Score = 127 bits (140), Expect = 3e-24 Identities = 212/304 (70%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| |||| ||||| | |||| ||||||||||| | Sbjct 9420564 GAACACTGAAGGCCGTAAAGGGACAGTCCTTCACGTTATTGCAGATGAGAGACTGAATGG 9420623 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| | || ||||| ||||| || || ||||| ||||||||||| | Sbjct 9420624 AGGCTGTGTTGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTA-C 9420682 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || ||| || |||| || ||||| | |||| | || || || || | Sbjct 9420683 TGAGAGATCATATGGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTA 9420742 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| |||||||| || | ||||| |||||||| |||| | | | || | Sbjct 9420743 CCATGGTCTCCCCGAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATA 9420802 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| | ||| |||| | | | || ||||| || ||||| |||| Sbjct 9420803 GCTCCATGGCATCAATGTCCCGGTAGAGGG-CTTCGGATCTGCAGCCATTTCCTTCTCTC 9420861 Query 8583 CTGT 8586 |||| Sbjct 9420862 CTGT 9420865 Score = 105 bits (116), Expect = 1e-17 Identities = 371/569 (65%), Gaps = 29/569 (5%) Strand=Plus/Plus Query 9007 AGTATGGAATTGTTGTAGACGAAGTT--AACGTAGTCATACTTTGTTTTATCAATCTCAA 9064 |||||||| |||||||||| || || || | || | || || || |||| | || Sbjct 9421062 AGTATGGAGTTGTTGTAGAGAAACTTTTAAAGCTGTACTCCTG-GTCTT--CAATTTGAA 9421118 Query 9065 ATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGAT 9124 | | ||| |||| || | |||| |||||| | ||||||| || | | || || | Sbjct 9421119 AGGTATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGT 9421178 Query 9125 TTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGT 9184 | |||||||| || | |||||||| || || || ||| || | || || | Sbjct 9421179 TCTGGTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGAT 9421238 Query 9185 AGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAA-TGTTGATGGTTTCCCCGATAATG 9243 | || || | ||||| || || | | ||| || | | | |||||| || || | | Sbjct 9421239 AACCACTCACGTGCTGGACATAGT-CTTCA--ATCAGTCTCGATGGTCTCTCCTGTCAGA 9421295 Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCAT-----TCTGGATGTTCTTGTT 9298 ||||| | | ||| || || ||| |||| ||||| ||||| || || ||| Sbjct 9421296 ATGAGCCTGCCAGCCTG-AAGAGCCGCTGGTCA-TCCATCCCACTCTGGGTGCTCCTGTC 9421353 Query 9299 TCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCC 9358 |||| | || || |||| ||| |||| |||||||| | |||||||||||| || | Sbjct 9421354 TCAGCGCGTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGC 9421409 Query 9359 CAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGG 9418 | || ||||| ||||| |||| | || ||||| | |||| || || || | | Sbjct 9421410 CTGGCACCAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGG-GTGTGAG 9421468 Query 9419 GAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9478 |||| | ||||| | | || | |||| ||| | || || |||| || || | || Sbjct 9421469 GAGGGCAAATCATTTCCGCCCGAGTGTCTCGGACTGTAGGCGGGTACACCTCTCCATGAA 9421528 Query 9479 TCATCTGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCG 9538 | | |||||| |||| || ||||| || ||||| ||| ||| | ||| | Sbjct 9421529 TGACCTGATATTTCA--------TCCTTGAAAAGGCGCAGTTTATGTTGTCTATCTAGAC 9421580 Query 9539 TCTCTCCATAGATGTGGTTGAGATCCACC 9567 | || ||||| |||||| | | |||||| Sbjct 9421581 TGTCACCATAAATGTGGCTTAAGTCCACC 9421609 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 8352 TGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGC 8411 ||| ||| | || ||||| ||||| || || ||||| ||||||||||| | | || | Sbjct 4664109 TGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTA-CTGAGAGATC 4664051 Query 8412 AGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCT 8471 | ||| || |||| || ||||| | |||| | || || || || | ||| ||| Sbjct 4664050 ATATGGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTACCATGGTCT 4663991 Query 8472 CACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAG 8531 | |||||||| || | ||||| |||||||| |||| | | | || ||||||| | Sbjct 4663990 CCCCGAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATAGCTCCATGG 4663931 Query 8532 CCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | || | ||| | ||| |||| | | | || ||||| || ||||| | |||||| Sbjct 4663930 CATCAATGTCCCGGTAGAGGG-CTTCGGCTCTGCAGCCATTTCCTTCTGTCCTGT 4663877 >seq54 Length=15450234 Score = 122 bits (134), Expect = 1e-22 Identities = 176/248 (71%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || |||||||| ||| ||||| Sbjct 11048675 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGC 11048616 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | |||||||||| |||||| |||| |||||||| |||||||||| | Sbjct 11048615 TCCGCCTTCAGCAGGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACAGC 11048556 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG--- 9408 | ||||| || | ||| ||||| |||| || || ||||||| || || || Sbjct 11048555 ACCAGCCCCGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA----TCTGGTTACGCGG 11048500 Query 9409 -GGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 || || | || || ||| ||| |||||| | |||| |||||||| ||||||| Sbjct 11048499 CGGGACGCCCGGCGGGTAGCGCATCAACACCTGAGCCTCTTCCACCGAGGGCGGATACAC 11048440 Query 9468 TTCACCGT 9475 || |||| Sbjct 11048439 CTCTCCGT 11048432 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || |||| || || || || || || ||| |||||||| | || || |||||| || Sbjct 11057270 AAGCCCATCTCACCACCAAATGTACTTGGCCTCCAGTACTCTGGAGAACAGATGGGATTT 11057211 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | ||| || ||||||||||| || ||||| | ||| | || ||||| || |||||| Sbjct 11057210 CCTAGGAGACCCTTGAGGGAGAAGGGCGCCCCGATCTCTATCATACTCTCCCCAAAGATG 11057151 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | |||||| || |||||| | | | || | ||| | ||||| ||| |||| |||| Sbjct 11057150 GAGTTGGGCTGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAAGCGTCGATGTCT 11057091 Query 8543 CCGTA 8547 || || Sbjct 11057090 CCATA 11057086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716779143457920