Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq116 141 9e-29
seq73 111 1e-19
seq57 95.1 1e-14
>seq116
Length=7179089
Score = 141 bits (156), Expect = 9e-29
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||||| ||||| ||| ||||||||| ||||| ||||| || | ||||||
Sbjct 4848373 AGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGG 4848432
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || ||||| | ||| ||||| | ||| | || |||
Sbjct 4848433 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4848492
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| ||| ||| | | | ||||| || | ||||||||||| ||
Sbjct 4848493 TTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4848552
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| ||||| || || |||||||| ||
Sbjct 4848553 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593
>seq73
Length=12918409
Score = 111 bits (122), Expect = 1e-19
Identities = 164/231 (71%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| |||| || || |||||||| ||||| ||| ||| ||||| |||| || || ||
Sbjct 707564 GCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGA 707506
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || || |||| ||||| ||||||||||| ||||| ||||| | ||
Sbjct 707505 GAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGG 707446
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || |||||||| ||| || ||| | | | ||||| || | || ||
Sbjct 707445 AATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAAC 707386
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | || || ||||| |||||||| ||||| || || || ||||| ||
Sbjct 707385 CTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTT 707335
>seq57
Length=15126812
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| ||| ||| ||||| ||||| || ||
Sbjct 1409835 ACAGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATC 1409776
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || ||||||||||| ||||| || || ||||| ||||| |
Sbjct 1409775 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGG 1409716
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
||| | || ||||||||| ||| || |||||
Sbjct 1409715 GGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCA 1409681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462241022637600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |