Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq116 141 9e-29 seq73 111 1e-19 seq57 95.1 1e-14 >seq116 Length=7179089 Score = 141 bits (156), Expect = 9e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| ||||||||| ||||| ||||| || | |||||| Sbjct 4848373 AGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGG 4848432 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||| | || ||| Sbjct 4848433 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4848492 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| ||| ||| | | | ||||| || | ||||||||||| || Sbjct 4848493 TTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4848552 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || |||||||| || Sbjct 4848553 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593 >seq73 Length=12918409 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| |||| || || |||||||| ||||| ||| ||| ||||| |||| || || || Sbjct 707564 GCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGA 707506 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || |||| ||||| ||||||||||| ||||| ||||| | || Sbjct 707505 GAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGG 707446 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||| ||| || ||| | | | ||||| || | || || Sbjct 707445 AATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAAC 707386 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || ||||| |||||||| ||||| || || || ||||| || Sbjct 707385 CTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTT 707335 >seq57 Length=15126812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| ||| ||| ||||| ||||| || || Sbjct 1409835 ACAGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATC 1409776 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| ||||| || || ||||| ||||| | Sbjct 1409775 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGG 1409716 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 ||| | || ||||||||| ||| || ||||| Sbjct 1409715 GGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCA 1409681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462241022637600