Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq970 127 4e-24 seq154 96.9 7e-15 seq37 91.5 3e-13 seq147 89.7 1e-12 seq29 89.7 1e-12 >seq970 Length=10449 Score = 127 bits (140), Expect = 4e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 319813 TCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGC 319872 |||| |||||||||||| ||| |||| | ||||| || ||||||||| |||| Sbjct 10067 TCGATATCGTGTTCCACATAAACAGTGCGACATTCATCCTGAGTGGGGAACCCGTCAACT 10126 Query 319873 TGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 319932 ||||| || |||| | ||||| || || ||||| || || || || || ||||| ||| Sbjct 10127 TGGCCATTAGCAATGGATCGCATTAGAGTGGATTTTCCGGCACCATTAGGACCACATAGA 10186 Query 319933 CCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCA 319992 || || | | || || |||| | || | || ||||| || | ||||| ||||| Sbjct 10187 CCATATCTCCTACCTCGCTTCAACCTCAATTGAGTCTTGTTTAGTAATATTTTGGCACCA 10246 Query 319993 TATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||||| ||||||||||||| ||||| ||| ||||| Sbjct 10247 TATGCCAAGGAAAATTCACAATTACACAAATCTTCACC 10284 >seq154 Length=964810 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 247761 TGCCCGGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 247702 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 247701 CCCCACGTTGGGC 247689 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||| Sbjct 235349 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCCTTAATCTCAGGGTCGTGGGTTCGAG 235408 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 235409 CCCCACGTTGGGC 235421 >seq37 Length=20616129 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 19832483 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 19832424 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 19832423 CCCCACGTTGGGC 19832411 >seq147 Length=1102546 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1041964 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1042023 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1042024 CCCACGTTGGGC 1042035 >seq29 Length=30242706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 6311957 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 6311898 Query 165768 GCCCCACGATGGGC 165781 |||||| | ||||| Sbjct 6311897 GCCCCATGTTGGGC 6311884 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 6319289 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6319348 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6319349 CCCACGTTGGGC 6319360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057626893340090