Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq161 208 8e-49 seq67 114 1e-20 seq58 114 1e-20 seq7 102 8e-17 seq19 84.2 2e-11 >seq161 Length=830332 Score = 208 bits (230), Expect = 8e-49 Identities = 572/873 (66%), Gaps = 40/873 (5%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || | || || | || || || |||||||| || || ||||| Sbjct 529817 ACTCCCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGT 529876 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATT-TTAGAGTACCCC 16780 || ||||||||||| || ||||| ||||| || ||||| || ||| || ||| Sbjct 529877 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAG---CCC 529933 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 || || || | ||||| || ||||| || || || || ||| || ||| ||| Sbjct 529934 AGCTCCAGCATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTC 529993 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || || | || | ||||| || | || || ||||| || || Sbjct 529994 ATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCA 530053 Query 16901 TCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | | ||||| | | |||| | ||| || ||| | || || ||||| ||| Sbjct 530054 T---TGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAAC 530110 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||||| || || || || || ||||| ||||| ||| |||| |||||||| || |||||| Sbjct 530111 ATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAAT 530170 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || |||||| |||||||||||| | | |||| Sbjct 530171 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGC-----------------------AGAA 530207 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || ||||| || | ||||| || | | ||||| | || || || |||||| Sbjct 530208 AAGAAGATTCCCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTG 530267 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | | |||| | | |||| |||||||| | ||| | ||| ||| ||| | ||| Sbjct 530268 TCCCCAATCAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATG 530327 Query 17198 GCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 || || || | | ||| |||| | || || || | || || || || || || || | Sbjct 530328 GCATTGAAGAGAAATTCCCTTTCTT-TGGAG-TCTTTAATGTAAGTGTCAATAAGGAGAC 530385 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 | |||||||| || |||||||| |||||||| || || || || || || | ||||||| Sbjct 530386 TATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTT 530445 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | ||||||||||| | ||||| ||| | | ||| || || || ||||| || | Sbjct 530446 CTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCAC 530505 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435 | || || | || |||| | || || |||||| ||| || || | || | Sbjct 530506 TTGCCGCAGAGAAAGCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTT 530565 Query 17436 GCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTG 17495 ||||| || | || |||| | | |||| || |||| |||||||| |||| | | Sbjct 530566 CCCAGTGCTGAATGTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAG 530624 Query 17496 CCTTTTTATACATATTCCAAATATCATTGTATT 17528 | || ||| |||| | ||| ||| ||| ||||| Sbjct 530625 CTTTATTACACATCTGCCAGATACCATGGTATT 530657 >seq67 Length=10555288 Score = 114 bits (126), Expect = 1e-20 Identities = 556/868 (64%), Gaps = 21/868 (2%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || || || ||||| || |||| ||| || || ||||| |||||||| ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 16754 GTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 || |||||| ||| ||| | || ||||| | | |||||| || ||||||||||| Sbjct 3668810 TCTGCCTGAAAAACCTTT-GAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTC 3668752 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 ||||| |||| ||| || | |||||||| | || || | || || | |||| || Sbjct 3668751 AATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGT 3668692 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT-ACTAGCAACTCGTTCCTCGG 16931 ||||| ||||| || || || | ||| || | || | ||| || | Sbjct 3668691 TAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTG 3668632 Query 16932 ACGGTGTATGT-TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCG 16990 | | ||| | |||| | | |||||| || || || || || | | | | | || Sbjct 3668631 AAGTCTTATTTACTAAG-TACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTTCA 3668573 Query 16991 TCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAAC 17050 |||||| |||| || || || ||||||| | || || || |||| ||||||||| Sbjct 3668572 TCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAAC 3668513 Query 17051 CAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATT 17110 || || || || || || || || || ||||| || || || || | | || | Sbjct 3668512 CAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCACC 3668453 Query 17111 AATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT 17170 | || ||| | | || | | | | | |||||| | | |||| || | |||| Sbjct 3668452 ACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTTTTT 3668393 Query 17171 TGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT---AATTTCTCTTTTTCCTGTAGG 17227 | ||| | | | ||| |||| || || |||||| |||||| |||| | | | Sbjct 3668392 TTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCT-TGGGATC 3668334 Query 17228 TC-GATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 || |||| || ||||| || || | ||||| || | ||||| | |||| ||| Sbjct 3668333 TCTGATTCTA---GTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAG 3668277 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGT 17344 || ||||| || || || || | || || | | ||| || ||| || || || | Sbjct 3668276 AATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGAC-TA-AAGCTC 3668219 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC---GAAAAACGCCAATATATGC 17401 ||| | | |||||| || | | || || || | || ||||| || || ||||| Sbjct 3668218 TCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGA 3668159 Query 17402 TTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATA 17461 | ||||| || || || | | |||| | | ||| | ||| || |||| | Sbjct 3668158 GAGAGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAA 3668099 Query 17462 -TCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 || || ||||| | ||||| || ||| ||||| || |||||| ||||||||||| Sbjct 3668098 GTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATC 3668039 Query 17521 ATTGTATTGTATGGGGAATACAACATAT 17548 ||| || || || |||| ||| || Sbjct 3668038 GGGGTACTGAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 114 bits (126), Expect = 1e-20 Identities = 294/445 (66%), Gaps = 12/445 (3%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||||||| || || | || ||| |||| ||||| |||||||| |||||| Sbjct 9036045 AGGTGTTTGAACATCAGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGT 9036104 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || | |||| | | || |||||| ||| | |||||| ||| | ||||| | | Sbjct 9036105 TCACTGGAAACTT--AGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCA 9036162 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || || | ||||| | || || || | ||||| || | | | ||| ||| Sbjct 9036163 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAG 9036222 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | | ||| | | |||| | ||||| || Sbjct 9036223 GTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGT 9036282 Query 17186 ATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTAT 17243 || ||||| ||||| || || | | ||| |||| | | | | | || || | Sbjct 9036283 ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTT-------TGAAATCTTTAAGTGT 9036335 Query 17244 CGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAA 17303 | || || || || |||||||| | |||| ||| |||||||| || || || | || | Sbjct 9036336 CAATAAGGAGACTATACATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGA 9036394 Query 17304 AGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCA 17363 | || | |||| | |||||||||||| | |||| ||| | | |||||| || | Sbjct 9036395 AACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTA 9036454 Query 17364 CGATGCCGTCGCTCGCGGCGAAAAA 17388 ||||| || || || || || || Sbjct 9036455 TTATGCCATCACTTGCTGCAAAGAA 9036479 >seq7 Length=60492774 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || |||||| ||||||||||| Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || ||||| || | ||||| | Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 17106 C 17106 | Sbjct 54099366 C 54099366 >seq19 Length=38427206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || ||||||||||| ||||| || |||||||| | ||| ||||| |||| |||||| Sbjct 3916227 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 3916286 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 ||||| ||||| || || || || || || ||||| || || || || | ||||| || Sbjct 3916287 AACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 3916345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517451516679240