Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq67 259 5e-64
seq161 215 5e-51
seq58 158 1e-33
seq19 107 2e-18
seq7 102 8e-17
>seq67
Length=10555288
Score = 259 bits (286), Expect = 5e-64
Identities = 580/861 (67%), Gaps = 15/861 (2%)
Strand=Plus/Minus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811
Query 15992 GTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTC 16050
|| |||||| | ||| ||| | || |||||| || |||||| || |||||||||||
Sbjct 3668810 TCTGCCTGAAAA-ACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTC 3668752
Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGT 16110
||||| || | ||| || | || || || | || || | || || | ||| |||
Sbjct 3668751 AATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGT 3668692
Query 16111 TAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGT-TTCAG 16169
|||||| | || || || || || | |||||| || | | | | | ||| |
Sbjct 3668691 TAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTG 3668632
Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229
| | ||| || || | ||||||||| || || ||||| | | ||| |||| |
Sbjct 3668631 AAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTTCAT 3668572
Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289
||||| |||| || || ||| |||| || | || || || |||| ||||||||||
Sbjct 3668571 CTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAACC 3668512
Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349
|||| || |||||||| || || || ||||| || || || |||| | || | |
Sbjct 3668511 AGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCACCA 3668452
Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409
|| |||| | | |||| | | ||| |||||| | | |||| || | |||||
Sbjct 3668451 CTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTTTTTT 3668392
Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA---TTTCTCTTTTTCCTGAATAT 16466
|| | | ||| |||| || || ||||| || |||| |||| | || | |
Sbjct 3668391 TCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGA-TCT 3668333
Query 16467 C-GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525
| |||| || ||||| || || |||||||| || | |||||| | |||| ||||
Sbjct 3668332 CTGATTCTA---GTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGA 3668276
Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585
|| ||||| |||||||| || | |||||| | | ||| || ||| ||| | |||
Sbjct 3668275 ATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCC 3668216
Query 16586 GCCAGGTTCTCATTCACGATACCGTCACT---TGCAGCAAAAAACGCCAATATGTGCTTA 16642
||| || ||||| | | || ||||| |||| |||||| || || || ||
Sbjct 3668215 ACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAG 3668156
Query 16643 ATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATA-TC 16701
| ||||| || || || ||| |||| | | | | | | ||| || |||| | ||
Sbjct 3668155 AGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTC 3668096
Query 16702 CACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATT 16761
|| ||||||| ||||| ||| ||| ||||| || ||||||||||||||||||
Sbjct 3668095 AACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGG 3668036
Query 16762 GTATTGTATGGGAAATACGAC 16782
||| || || ||||||| |||
Sbjct 3668035 GTACTGAATTGGAAATATGAC 3668015
>seq161
Length=830332
Score = 215 bits (238), Expect = 5e-51
Identities = 559/850 (66%), Gaps = 34/850 (4%)
Strand=Plus/Plus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || ||||||||||| || || |||| || ||||| |||||||| ||||| |||||
Sbjct 529847 TTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATTT 529906
Query 15992 GTAGCT--GAAAATATC-TTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048
|| ||||| | ||| || ||||| ||| | | |||||||| |||||
Sbjct 529907 TCTACTTTGAAAACCTTGTTAAAG---CCCAGCTCCAGCATAAGCCTATCTGCCACAAAG 529963
Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108
|| || || || ||| || |||||| || || || || | || | |||| |
Sbjct 529964 TCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTCTCAGGCAAGGCTTCT 530023
Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168
|| | || |||||||| || || | |||| | || | ||| ||
Sbjct 530024 GTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTTTCTTTTACTCTCTGCTCT 530083
Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228
|| ||| | || |||||||| ||||| || || || ||||| || |||| || ||
Sbjct 530084 GATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCA 530143
Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288
||| |||| |||||||| |||||||| || | || ||||| |||||||||||| |
Sbjct 530144 TCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGA-- 530201
Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348
||| |||||||| || ||||| |||| ||||| || |
Sbjct 530202 ---------GCA------------GAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTACA 530240
Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408
| ||||| | || ||||| ||||| | | |||| | | |||| ||||||||
Sbjct 530241 ACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGCAAGGCCCAATCGGCTTTC 530300
Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATAT 16466
| || | |||| ||| ||| | ||||| || | | || ||| |||| | || |
Sbjct 530301 TTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAATTCCCTTTCTTTGGA--GT 530358
Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526
| | || || || ||||| || | ||| |||||||| || |||||||| || ||||| |
Sbjct 530359 CTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 530418
Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586
| || || |||||||| | || || || | ||||| ||||| | |||||| |||
Sbjct 530419 TTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCA 530478
Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646
||| |||||||| || || || |||||||| ||| | || |||| | ||| || |
Sbjct 530479 CCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCCAGAAAGTGGGATATAA 530538
Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706
||||| ||| |||| | || | ||| | | | || |||| | | |||| |
Sbjct 530539 AATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCCTGGA-AGAGCCACCT 530597
Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766
| || | ||||||||| |||| | || || ||| |||| | ||| ||| ||| |||||
Sbjct 530598 CCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTGCCAGATACCATGGTATT 530657
Query 16767 GTATGGGAAA 16776
|| |||||
Sbjct 530658 CCATAGGAAA 530667
>seq58
Length=13050397
Score = 158 bits (174), Expect = 1e-33
Identities = 403/605 (67%), Gaps = 19/605 (3%)
Strand=Plus/Plus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
|||||||| ||||| || || || |||| ||| ||| || || |||||||| ||||||
Sbjct 9036045 AGGTGTTTGAACATCAGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGT 9036104
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| |||||| ||| || ||||| ||| | |||||| ||| ||||||| | ||
Sbjct 9036105 TCACTGGAAAC--TTAGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCA 9036162
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363
|| || | | ||||| | || || |||| ||||| || | | | ||| |||
Sbjct 9036163 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAG 9036222
Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423
||||| ||||| | | |||||| | | ||| | | |||| | |||| | ||
Sbjct 9036223 GTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGT 9036282
Query 16424 ATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481
|| ||||| ||||| || || | | ||| |||| | |||| ||| | || || |
Sbjct 9036283 ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTT-TGAA-ATC-----TTTAAGTGT 9036335
Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541
|||| || | ||| |||||||| | |||| ||| || ||||| || || || ||||||
Sbjct 9036336 CAATAAGGAGACTATACATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGA 9036394
Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601
| || || | || | ||||| |||||| | |||| ||| ||| || ||||| |
Sbjct 9036395 AACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTA 9036454
Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATG-TGCTTAATGAAATATTTTTCGTCA 16660
|| || |||||||| ||||| || || || || || |||||| | | |||
Sbjct 9036455 TTATGCCATCACTTGCTGCAAAGAAATTCATAATTATGAGACATAAAATATCATACCTCA 9036514
Query 16661 GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATC---CACTTCTTCTGGCGTC 16717
||| | || | | | | | | || ||||| ||| | ||| ||||||| ||
Sbjct 9036515 GATTTCAGGGCTTCCTAGTATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTG---TC 9036571
Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAAT 16777
||||| | | | ||||| ||| | || | ||||||||||| |||| || |||||
Sbjct 9036572 AAAAAGGAACCTTCAGCCTTCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAG 9036631
Query 16778 ACGAC 16782
| |||
Sbjct 9036632 AAGAC 9036636
>seq19
Length=38427206
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| |||||||| || | ||| ||||| |||| ||||
Sbjct 3916225 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 3916284
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||||||||||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 3916285 TTAACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3916344
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 3916345 CAACCACTCTTTCC 3916358
>seq7
Length=60492774
Score = 102 bits (112), Expect = 8e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || || |||||||| || ||||| |||| ||||| ||
Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGC 54099366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511321431254760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |