Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq67 259 5e-64 seq161 215 5e-51 seq58 158 1e-33 seq19 107 2e-18 seq7 102 8e-17 >seq67 Length=10555288 Score = 259 bits (286), Expect = 5e-64 Identities = 580/861 (67%), Gaps = 15/861 (2%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||| || ||||| || |||||||| || ||||||||||||||||||||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 15992 GTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTC 16050 || |||||| | ||| ||| | || |||||| || |||||| || ||||||||||| Sbjct 3668810 TCTGCCTGAAAA-ACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTC 3668752 Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGT 16110 ||||| || | ||| || | || || || | || || | || || | ||| ||| Sbjct 3668751 AATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGT 3668692 Query 16111 TAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGT-TTCAG 16169 |||||| | || || || || || | |||||| || | | | | | ||| | Sbjct 3668691 TAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTG 3668632 Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229 | | ||| || || | ||||||||| || || ||||| | | ||| |||| | Sbjct 3668631 AAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTTCAT 3668572 Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289 ||||| |||| || || ||| |||| || | || || || |||| |||||||||| Sbjct 3668571 CTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAACC 3668512 Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 |||| || |||||||| || || || ||||| || || || |||| | || | | Sbjct 3668511 AGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCACCA 3668452 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 || |||| | | |||| | | ||| |||||| | | |||| || | ||||| Sbjct 3668451 CTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTTTTTT 3668392 Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA---TTTCTCTTTTTCCTGAATAT 16466 || | | ||| |||| || || ||||| || |||| |||| | || | | Sbjct 3668391 TCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGA-TCT 3668333 Query 16467 C-GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525 | |||| || ||||| || || |||||||| || | |||||| | |||| |||| Sbjct 3668332 CTGATTCTA---GTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGA 3668276 Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585 || ||||| |||||||| || | |||||| | | ||| || ||| ||| | ||| Sbjct 3668275 ATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCC 3668216 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACT---TGCAGCAAAAAACGCCAATATGTGCTTA 16642 ||| || ||||| | | || ||||| |||| |||||| || || || || Sbjct 3668215 ACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAG 3668156 Query 16643 ATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATA-TC 16701 | ||||| || || || ||| |||| | | | | | | ||| || |||| | || Sbjct 3668155 AGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTC 3668096 Query 16702 CACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATT 16761 || ||||||| ||||| ||| ||| ||||| || |||||||||||||||||| Sbjct 3668095 AACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGG 3668036 Query 16762 GTATTGTATGGGAAATACGAC 16782 ||| || || ||||||| ||| Sbjct 3668035 GTACTGAATTGGAAATATGAC 3668015 >seq161 Length=830332 Score = 215 bits (238), Expect = 5e-51 Identities = 559/850 (66%), Gaps = 34/850 (4%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| || || |||| || ||||| |||||||| ||||| ||||| Sbjct 529847 TTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATTT 529906 Query 15992 GTAGCT--GAAAATATC-TTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 || ||||| | ||| || ||||| ||| | | |||||||| ||||| Sbjct 529907 TCTACTTTGAAAACCTTGTTAAAG---CCCAGCTCCAGCATAAGCCTATCTGCCACAAAG 529963 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 || || || || ||| || |||||| || || || || | || | |||| | Sbjct 529964 TCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTCTCAGGCAAGGCTTCT 530023 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 || | || |||||||| || || | |||| | || | ||| || Sbjct 530024 GTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTTTCTTTTACTCTCTGCTCT 530083 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 || ||| | || |||||||| ||||| || || || ||||| || |||| || || Sbjct 530084 GATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCA 530143 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 ||| |||| |||||||| |||||||| || | || ||||| |||||||||||| | Sbjct 530144 TCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGA-- 530201 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||| |||||||| || ||||| |||| ||||| || | Sbjct 530202 ---------GCA------------GAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTACA 530240 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | ||||| | || ||||| ||||| | | |||| | | |||| |||||||| Sbjct 530241 ACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGCAAGGCCCAATCGGCTTTC 530300 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATAT 16466 | || | |||| ||| ||| | ||||| || | | || ||| |||| | || | Sbjct 530301 TTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAATTCCCTTTCTTTGGA--GT 530358 Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526 | | || || || ||||| || | ||| |||||||| || |||||||| || ||||| | Sbjct 530359 CTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 530418 Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586 | || || |||||||| | || || || | ||||| ||||| | |||||| ||| Sbjct 530419 TTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCA 530478 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 ||| |||||||| || || || |||||||| ||| | || |||| | ||| || | Sbjct 530479 CCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCCAGAAAGTGGGATATAA 530538 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||||| ||| |||| | || | ||| | | | || |||| | | |||| | Sbjct 530539 AATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCCTGGA-AGAGCCACCT 530597 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 | || | ||||||||| |||| | || || ||| |||| | ||| ||| ||| ||||| Sbjct 530598 CCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTGCCAGATACCATGGTATT 530657 Query 16767 GTATGGGAAA 16776 || ||||| Sbjct 530658 CCATAGGAAA 530667 >seq58 Length=13050397 Score = 158 bits (174), Expect = 1e-33 Identities = 403/605 (67%), Gaps = 19/605 (3%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| ||||| || || || |||| ||| ||| || || |||||||| |||||| Sbjct 9036045 AGGTGTTTGAACATCAGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGT 9036104 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||| ||| || ||||| ||| | |||||| ||| ||||||| | || Sbjct 9036105 TCACTGGAAAC--TTAGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCA 9036162 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || | | ||||| | || || |||| ||||| || | | | ||| ||| Sbjct 9036163 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAG 9036222 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||||| | | |||||| | | ||| | | |||| | |||| | || Sbjct 9036223 GTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGT 9036282 Query 16424 ATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 || ||||| ||||| || || | | ||| |||| | |||| ||| | || || | Sbjct 9036283 ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTT-TGAA-ATC-----TTTAAGTGT 9036335 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 |||| || | ||| |||||||| | |||| ||| || ||||| || || || |||||| Sbjct 9036336 CAATAAGGAGACTATACATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGA 9036394 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || | || | ||||| |||||| | |||| ||| ||| || ||||| | Sbjct 9036395 AACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTA 9036454 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATG-TGCTTAATGAAATATTTTTCGTCA 16660 || || |||||||| ||||| || || || || || |||||| | | ||| Sbjct 9036455 TTATGCCATCACTTGCTGCAAAGAAATTCATAATTATGAGACATAAAATATCATACCTCA 9036514 Query 16661 GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATC---CACTTCTTCTGGCGTC 16717 ||| | || | | | | | | || ||||| ||| | ||| ||||||| || Sbjct 9036515 GATTTCAGGGCTTCCTAGTATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTG---TC 9036571 Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAAT 16777 ||||| | | | ||||| ||| | || | ||||||||||| |||| || ||||| Sbjct 9036572 AAAAAGGAACCTTCAGCCTTCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAG 9036631 Query 16778 ACGAC 16782 | ||| Sbjct 9036632 AAGAC 9036636 >seq19 Length=38427206 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | ||| ||||| |||| |||| Sbjct 3916225 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 3916284 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||||||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 3916285 TTAACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3916344 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 3916345 CAACCACTCTTTCC 3916358 >seq7 Length=60492774 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || ||||| |||| ||||| || Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGC 54099366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511321431254760