Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq18 381 4e-101 seq21 181 8e-41 seq49 127 1e-24 >seq18 Length=40650429 Score = 381 bits (422), Expect = 4e-101 Identities = 420/556 (76%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| | |||| |||| |||||||||||||||||||| | |||||| || || || Sbjct 35283752 TATTAATCAATCTTTTCATGAACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGTACC 35283693 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||||||||||| ||| |||||| | || ||| |||||||| | ||||| ||||| | Sbjct 35283692 TCAGAAAGAACACCTGGGTATTCTGGAAGAATTTTATATTTCTCCAAATCAATTTCTGAA 35283633 Query 4087 AAAAAG--GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGC 4144 ||||| ||||||| |||||| || ||||||||||| |||||||||||||||| || || Sbjct 35283632 AAAAAAAAGTGTCACTTTCAAATTCCTGCATGATCCTTGTCACAAACAGTTTAATATGGC 35283573 Query 4145 ATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTA 4204 | | | | |||| ||||| ||||| |||||||| ||||| | |||||| || ||||||| Sbjct 35283572 CTAGTTGAATCATGGCTTCCTTATAAACAGAACTGCCTCCTACTATCCAAACTATGTCTA 35283513 Query 4205 CTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA 4264 |||| ||||||||||||||| || ||||||||||| |||| | ||| || || | Sbjct 35283512 TTTTACTTGCTAATTCTGGCTCCTCAGTAAGTTTTAAGGCATTGGTCAGACTTTTGGCAA 35283453 Query 4265 AAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGC 4324 ||||||||||| || | ||| || | |||| | ||||||| |||||||||| Sbjct 35283452 GAAAATGAGCTC-CTGAGTAAGTTCTTGGGGTTCTCTATTGAGAACTTTATTAATTCTGT 35283394 Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 | || ||||| | |||||||||||||| |||||||| |||||| | | || Sbjct 35283393 C-TTCAAAGGTCAATTCTTCTCAGGAATAGAGAACCAGGTCTTT-------TGGTAGGTA 35283342 Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCAT 4444 |||||||||| || ||| ||||| | || |||||| | ||||| || || |||| Sbjct 35283341 GATTCTGTTTACCTTCTACTGAAGAGTTTGTGGTCATTTATCAGAAATACTTGAATTCAT 35283282 Query 4445 TCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAG 4504 || | || | ||||| |||| || | | |||| ||||||||||||||| | | | Sbjct 35283281 TCCTGAGCCAGGGCCAGGGCAGGTCCCAGTTCTTGCTAATGCCCATGTTTTGCGACATGG 35283222 Query 4505 CAACAATGCAGTTTAG 4520 |||||||||||||| Sbjct 35283221 TGACAATGCAGTTTAG 35283206 >seq21 Length=35249227 Score = 181 bits (200), Expect = 8e-41 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 ||||| || ||||| |||||||| |||| ||| | ||||||||| |||| || ||||| Sbjct 19021655 ATGGGGGTGACGCAGGTGCAGCCCACAGCCACCACCATCTTCTCCAGCCGGAAGGAATTG 19021596 Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074 |||||| | ||| | | | |||| || || |||||||| ||||| ||||| |||||| Sbjct 19021595 GGGCAGTGCTGAGACTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGGGACGGAGTTC 19021536 Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134 ||||||| ||| || ||||| |||||| ||| ||| || | || ||| |||||||| ||| Sbjct 19021535 ATGTGGTGGTCCACCTTCCCTTCAGCAGTAATACAGCCCAGGTGGCGGCACTTTGCCTCC 19021476 Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||||| ||| ||||| || | || |||||||| Sbjct 19021475 CAGATCACAGTGGGGTATCTCTCAGGGTCCTCATTGCG 19021438 >seq49 Length=15574225 Score = 127 bits (140), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 |||||||| || | | ||||| |||||||| ||||| | |||||| | |||||||| || Sbjct 8188096 GATAACTC-TACTTACCTTATAAACAGAACTGCCTCCTACTATCCAAATCATGTCTATTT 8188154 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 || |||||||||||||||| || ||||||||||| ||||| | ||| || || | || Sbjct 8188155 TACTTGCTAATTCTGGCTGCTCAGTAAGTTTTAAGGCATCGGTCAGACTTTTGGCAAGAA 8188214 Query 4268 AATGAGCTCTATGTGGAAGCTC 4289 ||||||||| |||||||| || Sbjct 8188215 AATGAGCTCCTTGTGGAAGTTC 8188236 Score = 122 bits (134), Expect = 6e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 8184733 AAGTTTATATTTCTCCAAATCAATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 8184792 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||||||||||| || || ||| | | |||| ||||| || | ||| | Sbjct 8184793 GATCCTTGTCACAAACAGTTTAATATGGCCTGGTTGAATCATGGCTTCCTTTGAAACAAA 8184852 Query 4176 AC 4177 || Sbjct 8184853 AC 8184854 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||| ||||| Sbjct 8194448 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGG 8194507 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| | |||||||||| || Sbjct 8194508 AATAGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 8194556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| | |||| |||||||||||||||||||||||||| | |||||| || || || | Sbjct 8177683 ATTAATCAGTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACCT 8177742 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 8177743 CAGAAAGAACACCTGGGTAT 8177762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361187170821293