Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq161 302 5e-77 seq67 197 2e-45 seq58 179 4e-40 seq87 127 2e-24 seq13 127 2e-24 seq4 122 1e-22 seq7 114 2e-20 seq19 107 2e-18 seq12166 89.7 6e-13 >seq161 Length=830332 Score = 302 bits (334), Expect = 5e-77 Identities = 628/937 (67%), Gaps = 36/937 (4%) Strand=Plus/Plus Query 23782 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 23838 |||| ||||||||| | |||| || | |||| ||| ||| | || ||||| |||| Sbjct 529761 TGTTCATTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 529820 Query 23839 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 23898 |||| | || || | || || | || || || || ||||| || ||||||| ||| | Sbjct 529821 CCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAA 529880 Query 23899 TATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAG 23958 |||| ||||| || || ||||||| || || | | | ||||| |||| || Sbjct 529881 TATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCA 529940 Query 23959 AAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA 24018 || | |||||||| ||||| || || || ||||||| |||||||| || | Sbjct 529941 GCATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAA 530000 Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 | || || | || | || | || || || | ||||| || | ||| || | | | Sbjct 530001 TTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCAT---TGA 530057 Query 24079 TAATAGATC---TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAAC 24135 |||| | | ||||| | | || ||| | || | ||||| ||||||| | Sbjct 530058 TAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGC 530117 Query 24136 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 | || || || ||||||| ||||| ||| | ||||| | ||| |||||||| ||||| | Sbjct 530118 AGGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGC 530177 Query 24196 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 24255 | ||||| || || || || || ||| ||||||||| | Sbjct 530178 CAGGCATCAGTCCTCGTTTCTTGAGC-----------------------AGAAAAGAAGA 530214 Query 24256 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTA 24312 |||| || || || |||||||| | || | ||||||||| | | | |||| | Sbjct 530215 TTCCCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAA 530274 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 || | ||||||||||| ||||| || |||||||||||||| | || ||||| | Sbjct 530275 TCAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGA 530334 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 ||||| | | |||| || ||||||| || || ||||| | ||||||||||||| Sbjct 530335 AGAGAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTT 530394 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | ||||| |||||||| ||||| ||||| || || ||||||| | || || ||||| | Sbjct 530395 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTT 530454 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | |||||| | |||||| || | ||||| ||||| ||||| || ||||| || ||| Sbjct 530455 GAACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAG 530514 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 | || |||| | || |||||||||| ||| || || | || | ||| | | Sbjct 530515 AGAAAGCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCT 530574 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 || || | || | | |||| || || |||||||||| || ||||| || || ||| Sbjct 530575 GAATGTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTAC 530633 Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 |||| | |||||| |||| |||| || ||||| || Sbjct 530634 ACATCTGCCAGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 197 bits (218), Expect = 2e-45 Identities = 567/865 (66%), Gaps = 18/865 (2%) Strand=Plus/Minus Query 23865 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTG 23924 || || || ||||| ||||| || ||||| || || |||||||| ||||| | ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 23925 GTAACATTATAGATTCTTTTA-AATCCCAATTCAGAAATCAATCTATCTGCGACAAACTC 23983 | | | | | |||| | ||||| | ||| || ||||| || || ||||| || Sbjct 3668810 TCTGCCTGAAAAAC-CTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTC 3668752 Query 23984 CATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 24043 ||||| |||||| |||| ||||| | || || |||||| | | | || Sbjct 3668751 AATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGT 3668692 Query 24044 AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-----TTTCT 24098 | ||| || || ||||| ||| || | | | ||| ||||| || ||||| Sbjct 3668691 TAAAAACTCCTGCTCAATTTTGACAGCAT---TAACAAT-GATCTCCCTCACCCTTTTCT 3668636 Query 24099 TCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCC 24158 || | || | ||| | | |||||| | || || || || || | || | Sbjct 3668635 TCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCT 3668576 Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| | || | || ||| |||| |||||||| || || | || | ||| || Sbjct 3668575 TCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTT 3668516 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 | ||| || || | ||||| ||||| || |||||||||||||| || || | ||| Sbjct 3668515 AACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCC 3668456 Query 24279 ATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCC 24335 | | |||||| ||| || | || || |||||| | ||||| || | Sbjct 3668455 ACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTT 3668396 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 24395 || || || || | |||||||| | || |||||||| | | | || || || | Sbjct 3668395 TTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGA 3668336 Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||| | | ||||| || | | ||| || || | || |||| || | ||| Sbjct 3668335 TCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGA 3668276 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 |||||||| || |||||||| | |||||| | || || || || || ||| | || Sbjct 3668275 ATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCC 3668216 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC---GCCAATACATGTTTT 24572 | ||||||||||| | |||| ||||||| ||||||||| || || | ||| Sbjct 3668215 ACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAG 3668156 Query 24573 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA-TC 24631 | |||||| || || |||| | | || || ||| | | | || ||| || |||| | || Sbjct 3668155 AGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTC 3668096 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 || ||||| ||||||| || ||||||| ||||| || |||||| ||||| || || | Sbjct 3668095 AACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGG 3668036 Query 24692 ATATTGAATTGGAAAAATAACAAAT 24716 || ||||||||||| || |||||| Sbjct 3668035 GTACTGAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 179 bits (198), Expect = 4e-40 Identities = 620/949 (65%), Gaps = 26/949 (3%) Strand=Plus/Plus Query 23779 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 23835 || |||| |||| || ||| |||| || | |||| ||| || | || ||||| Sbjct 9035705 TTCTGTTCATTTAGAAATCAGCATCCAAGGTAAAAGAATTCCCTGTTGGATTTGACATCT 9035764 Query 23836 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 23895 ||||||| | || || ||||| || || || || || ||| | || ||||| || Sbjct 9035765 CTCCCATCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTG-TG 9035823 Query 23896 ATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA-T 23954 | ||||| ||||| || || |||||||| || | | | | |||| |||| | Sbjct 9035824 AAATATTCTCCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 9035883 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 ||| | | | || ||||| || || || ||||| ||||||| || ||||| Sbjct 9035884 TCATCA-TAAGCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATC 9035942 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || | | || || || | ||| | | || || || ||||| | ||| || | | Sbjct 9035943 CCAGTGAACTTCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCAT-T 9036001 Query 24075 GTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATC 24131 | || |||| |||| ||| | | || || | | | | | | | ||||| |||||| Sbjct 9036002 GATA-AATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATC 9036059 Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 | || || | || || ||| |||||| ||||| ||||| | ||| |||||| | Sbjct 9036060 AGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TT 9036117 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 || || ||||| | || | || || | | | ||||| || |||| || || | ||| Sbjct 9036118 AGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAG 9036177 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCA 24308 || ||||||| || || |||||||| | || | ||||| || | | | |||| Sbjct 9036178 AAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCC 9036237 Query 24309 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 ||||| | || ||| | ||||| |||||| |||| ||||| || || ||| Sbjct 9036238 CCAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCA 9036297 Query 24369 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 || |||||| | | |||| || |||||||| || ||||| | ||||||||| Sbjct 9036298 TTGAAGAGAAATTCCCTTTCTTTGAAATCTTTAA-----GTGTCAATAAGGAGACTATAC 9036352 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 ||||| |||| | |||||| ||||| ||||| || | |||||||| | | || ||| Sbjct 9036353 ATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTA 9036411 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 || || ||||| | |||| || | ||||||||||| | ||| || ||||| ||| Sbjct 9036412 ATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCT 9036471 Query 24549 GCAAA-AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| ||| | | ||| ||||||||| | | || | | | || |||| Sbjct 9036472 GCAAAGAAATTCATAATTATGAGACATAAAATATCATACCTCAGATTTCAG-GGCTTCCT 9036530 Query 24608 ATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || | || || || || ||| | || | || ||||| |||| || | || |||| Sbjct 9036531 AGTATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCT 9036590 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||| | || | ||| || ||||| ||| || ||||| | ||||| Sbjct 9036591 TCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq87 Length=7156779 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | ||||||||||||| ||||| |||||||| |||| Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 | ||| || || |||||||| | | || ||||| || |||||| | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 | ||||||||||| ||| || ||||| |||||||| || |||| ||| | ||| Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 24575 AAAATATTTTTCGTCTGG 24592 ||||||| ||| || || Sbjct 718231 AAAATATCGTTCCTCAGG 718248 >seq13 Length=48154242 Score = 127 bits (140), Expect = 2e-24 Identities = 345/519 (66%), Gaps = 27/519 (5%) Strand=Plus/Minus Query 24158 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 24217 ||| ||||| ||||| | ||| ||||||| ||||| || ||||| || | | || || Sbjct 23470804 CTCATCTCTGCTAATAAGTTCACTGGAAAATGTGAGACCAGGCATCAGCCATCATTTCTT 23470745 Query 24218 AAGCCAAAATATG--GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 |||||| ||||| || ||||| || ||||||| ||| ||| |||| || |||||| Sbjct 23470744 AAGCCAGAATATACTGATGCAAAAGAACCAGAAAGGAAGATTTCTTCCACATTAGCAAAG 23470685 Query 24276 GCAATAAGTCTTTCTC--CATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 || | | || | ||| || || | | | ||||| || || |||| | Sbjct 23470684 GCTACA--TCATGCTCTTCACAAATAGACTTTT----TATCCTGATT----CCAAATCTG 23470635 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 24393 ||||| || ||||||||||| | || | |||| |||| | | | |||||| || Sbjct 23470634 TTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGG 23470575 Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 || |||| ||| ||| | | ||| |||||| | ||||| || ||| | |||| Sbjct 23470574 AATTTTTA----GTGTGATAATAAGGAAACTGTACATTACAGAATGTATTTTTCCTATGG 23470519 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 | ||||| ||||| |||||||| || || ||||| || | |||| | |||| | | Sbjct 23470518 CAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCT 23470459 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | || |||||| | ||| | |||| |||| |||| |||| |||||| || Sbjct 23470458 TCACCAATTTTTCACGTATTATGCTATCAC---CTGCTAAAA--GCCAGAACATGTGCTA 23470404 Query 24574 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT--TAGATATATC 24631 |||||| | | || || | | || |||| | |||| || || | | | ||| Sbjct 23470403 TAAAATCTCTCTCCTCAAGCTTCAG-GGCTTCCCAGGGTTGA-ATGTTCCTGAAGAGATC 23470346 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 || || | ||||||||||| || ||||| || ||||| Sbjct 23470345 TACCTCGTTAACTGTCCAAAAGGAAGCCTCAGCTTTTTT 23470307 >seq4 Length=67649338 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 16418169 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 16418110 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 16418109 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 16418050 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 16418049 CTGTTTCTTACACCATA 16418033 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||| |||||||| |||||||| |||||||||||||| | || ||||| |||| || Sbjct 16406669 CTCCACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCG 16406610 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 16406609 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 16406550 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 ||||||| ||| || | | ||||||| || Sbjct 16406549 AGGTTCCAGGTAAATAGCAAATGCTCCAGGACG 16406517 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || |||||| ||| | || || || ||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || |||||||||||||| || || || ||||| |||||||| | | || | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||| ||||||| | |||||| || || |||| Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGGAA 16420783 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 16395537 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 16395478 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | |||||| || | Sbjct 16395477 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTATCTA 16395418 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || |||||| | |||| |||||||| || ||||| Sbjct 16395417 GTTCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCAT 16395372 >seq7 Length=60492774 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| ||||| || || || ||||||| Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 54099366 CTACAACACGTTCTCC 54099381 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 54101125 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 54101184 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || ||||| || |||||| | |||||| || Sbjct 54101185 ATTTGGAAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTC 54101243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 23766 CAAATATCGGCAT---TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT 23822 |||||| ||||| || |||| ||||||||||| |||| || | |||| ||| ||| Sbjct 54097663 CAAATAAAGGCATATCTTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCT 54097722 Query 23823 TCTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 | || ||||| |||||||| | || || || || || | || || || || ||| Sbjct 54097723 GTTGGATTCGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTA 54097782 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 || || ||||||| ||| ||||| ||||| || || ||||||| Sbjct 54097783 GTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATT 54097826 >seq19 Length=38427206 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 3916227 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 3916286 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 | ||| ||||| | ||||| ||||| || |||||||||||||| || || ||||||||| Sbjct 3916287 AACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCA 3916346 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 3916347 ACCACTCTTTCCCC 3916360 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 3927091 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 3927150 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || ||||||||||| ||||||| Sbjct 3927151 TACTGGATTGGAAAAATGACAAATC 3927175 >seq12166 Length=2209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 23766 CAAATATCGGCAT---TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT 23822 |||||| ||||| || |||| ||||||||||| |||| || | |||| ||| ||| Sbjct 2030 CAAATAAAGGCATATCTTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCT 2089 Query 23823 TCTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 | || ||||| |||||||| | || || || || || | || || || || ||| Sbjct 2090 GTTGGATTCGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTA 2149 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 || || ||||||| ||| ||||| ||||| || || ||||||| Sbjct 2150 GTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593613668834640