Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq25 295 8e-75 seq11 174 2e-38 seq13 165 1e-35 seq78 102 1e-16 >seq25 Length=31340621 Score = 295 bits (326), Expect = 8e-75 Identities = 590/857 (69%), Gaps = 23/857 (3%) Strand=Plus/Minus Query 176395 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 176454 |||||||| | | |||||| | || ||| | |||| || | |||| | | || | Sbjct 9264916 TGGGCAATGTGGTGGTGGTGCTGATCCTCACCAAGTACAGGAGGCTCAAGGTCATGACCA 9264857 Query 176455 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 176514 |||| | ||| | ||| |||| || ||||||||||| ||||| || ||| | || || | Sbjct 9264856 ACATCTATCTGCTCAACCTGGCGATTTCTGACTTGCTCTTTCTCTTCACTCTTCCCTTCT 9264797 Query 176515 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 176574 |||| ||||| |||| || | | || ||| ||||||| || | |||| || || | Sbjct 9264796 GGATCCACTACGTTGGG-TGGAAC--GAGTGGGTTTTTGGTCCTTTCATGTGCAAGCTCC 9264740 Query 176575 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 176634 || ||| | | |||| || |||||||| || |||||| |||||||||||| || Sbjct 9264739 TCTCGGGGTTTTATTACCTGGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACCA 9264680 Query 176635 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAAC 176692 | |||||||| || || | ||| | || || ||| || ||| | || || || Sbjct 9264679 TCGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGACGGTGAC 9264622 Query 176693 CTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGA 176752 | || | | | | | | |||||| | ||||||| | || | ||||||| || Sbjct 9264621 TTTCGGTGTCAGCAGCAGCATCTTCACCTGGGTCCTGGCAGTGCTGGCGGCCCTCCCCGA 9264562 Query 176753 ATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGA--TCCTTACTAC 176810 |||| ||||||||| |||| | | | | || || | || || |||| |||| Sbjct 9264561 ATTTATCTTTCATGAGTCCCAACAGGGCTCCGA-AGAGT-CTGTCTGCAGTCCTCTCTAC 9264504 Query 176811 CCAGAG-ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAG 176869 |||||| | | | | | | ||| ||| ||| | | | | ||| || || | Sbjct 9264503 CCAGAGGACGAGGAAGACAGCT-GGAAGCGTTTCCATGCTCTGAGGATGAACATCTTGGG 9264445 Query 176870 TCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTT 176929 |||| | ||||||||||| ||||| |||||||||| || || || | || |||| | Sbjct 9264444 TCTCGCGCTCCCTCTGCTCATCATGGCCGTCTGCTACTCTGGGATCATAAAAACACTGCT 9264385 Query 176930 GAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGC 176989 ||| |||||| || || |||||||| |||||| ||||||| ||| |||||||||||| Sbjct 9264384 GAGATGCCCCAACAGAAAAAAGTACAAAGCCATCCGGCTCATTTTTATCATCATGGTGGT 9264325 Query 176990 CTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAAC 177049 || ||| |||| ||||| ||||||||| | |||||||| || ||| | ||||| | Sbjct 9264324 CTTTTTCATTTTCTGGACCCCCTACAACCTGGTTCTCCTTCTCTCTGCTTTTCAAATGAA 9264265 Query 177050 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTA---ACTTGGACATGGCTCTGCTGATAA 177105 | | || | | ||| |||| | |||||| | ||||| |||| ||| | | | Sbjct 9264264 CTTACTGGA-GTACAGCTGTG---AGCGCAGTAGACATCTGGACCTGGCCATGCAGGTGA 9264209 Query 177106 CAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGG 177165 || | | ||||| || ||||| ||| ||||||| || |||||||| ||||| || | Sbjct 9264208 CAGAGGTGATCGCCTATACCCACTGCTGCGTCAACCCTGTCATCTACGCCTTCGTCGGCG 9264149 Query 177166 AGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGC 177224 ||| ||| |||| | ||||| ||| || ||||||| ||||| |||||||||| || Sbjct 9264148 AGAGGTTCCAGAA-ATACCTGCGCCATTTTTTCCACAGGCACGTGACCATCTACCTGGGC 9264090 Query 177225 AAGTACATCCCCTTCCT 177241 || |||||||| ||||| Sbjct 9264089 AAATACATCCCATTCCT 9264073 Score = 295 bits (326), Expect = 8e-75 Identities = 590/857 (69%), Gaps = 23/857 (3%) Strand=Plus/Minus Query 9509 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 9568 |||||||| | | |||||| | || ||| | |||| || | |||| | | || | Sbjct 9264916 TGGGCAATGTGGTGGTGGTGCTGATCCTCACCAAGTACAGGAGGCTCAAGGTCATGACCA 9264857 Query 9569 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 9628 |||| | ||| | ||| |||| || ||||||||||| ||||| || ||| | || || | Sbjct 9264856 ACATCTATCTGCTCAACCTGGCGATTTCTGACTTGCTCTTTCTCTTCACTCTTCCCTTCT 9264797 Query 9629 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 9688 |||| ||||| |||| || | | || ||| ||||||| || | |||| || || | Sbjct 9264796 GGATCCACTACGTTGGG-TGGAAC--GAGTGGGTTTTTGGTCCTTTCATGTGCAAGCTCC 9264740 Query 9689 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 9748 || ||| | | |||| || |||||||| || |||||| |||||||||||| || Sbjct 9264739 TCTCGGGGTTTTATTACCTGGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACCA 9264680 Query 9749 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAAC 9806 | |||||||| || || | ||| | || || ||| || ||| | || || || Sbjct 9264679 TCGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGACGGTGAC 9264622 Query 9807 CTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGA 9866 | || | | | | | | |||||| | ||||||| | || | ||||||| || Sbjct 9264621 TTTCGGTGTCAGCAGCAGCATCTTCACCTGGGTCCTGGCAGTGCTGGCGGCCCTCCCCGA 9264562 Query 9867 ATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGA--TCCTTACTAC 9924 |||| ||||||||| |||| | | | | || || | || || |||| |||| Sbjct 9264561 ATTTATCTTTCATGAGTCCCAACAGGGCTCCGA-AGAGT-CTGTCTGCAGTCCTCTCTAC 9264504 Query 9925 CCAGAG-ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAG 9983 |||||| | | | | | | ||| ||| ||| | | | | ||| || || | Sbjct 9264503 CCAGAGGACGAGGAAGACAGCT-GGAAGCGTTTCCATGCTCTGAGGATGAACATCTTGGG 9264445 Query 9984 TCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTT 10043 |||| | ||||||||||| ||||| |||||||||| || || || | || |||| | Sbjct 9264444 TCTCGCGCTCCCTCTGCTCATCATGGCCGTCTGCTACTCTGGGATCATAAAAACACTGCT 9264385 Query 10044 GAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGC 10103 ||| |||||| || || |||||||| |||||| ||||||| ||| |||||||||||| Sbjct 9264384 GAGATGCCCCAACAGAAAAAAGTACAAAGCCATCCGGCTCATTTTTATCATCATGGTGGT 9264325 Query 10104 CTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAAC 10163 || ||| |||| ||||| ||||||||| | |||||||| || ||| | ||||| | Sbjct 9264324 CTTTTTCATTTTCTGGACCCCCTACAACCTGGTTCTCCTTCTCTCTGCTTTTCAAATGAA 9264265 Query 10164 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTA---ACTTGGACATGGCTCTGCTGATAA 10219 | | || | | ||| |||| | |||||| | ||||| |||| ||| | | | Sbjct 9264264 CTTACTGGA-GTACAGCTGTG---AGCGCAGTAGACATCTGGACCTGGCCATGCAGGTGA 9264209 Query 10220 CAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGG 10279 || | | ||||| || ||||| ||| ||||||| || |||||||| ||||| || | Sbjct 9264208 CAGAGGTGATCGCCTATACCCACTGCTGCGTCAACCCTGTCATCTACGCCTTCGTCGGCG 9264149 Query 10280 AGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGC 10338 ||| ||| |||| | ||||| ||| || ||||||| ||||| |||||||||| || Sbjct 9264148 AGAGGTTCCAGAA-ATACCTGCGCCATTTTTTCCACAGGCACGTGACCATCTACCTGGGC 9264090 Query 10339 AAGTACATCCCCTTCCT 10355 || |||||||| ||||| Sbjct 9264089 AAATACATCCCATTCCT 9264073 Score = 113 bits (124), Expect = 5e-20 Identities = 212/306 (69%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 176877 TTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGC 176936 ||||| |||||||| |||| ||||||||| | || | |||| ||| | | | Sbjct 9196009 TTGCCCCTGCTCATCATGGTCATCTGCTACTCAGGGATCCTGAGAACCCTGCTTCGATGT 9195950 Query 176937 CCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTT 176996 | ||| |||||| ||||||| | ||||||||||| ||||||| | | ||| ||| Sbjct 9195949 CGGAGCGAGAAGAGACACAAGGCTGTGAGGCTCATCTTCACCATCATGATTGTCTACTTT 9195890 Query 176997 GTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT 177056 |||| ||| | ||||||||||| || ||||| ||| | ||||| || | || || || Sbjct 9195889 CTTTTCTGGGCTCCCTACAACATCGTCCTCCTCCTGACCACCTTCCA-GGAATTCT--TT 9195833 Query 177057 AACCTGCA-GTGTGCATTGAGCAGTAAC---TTGGACATGGCTCTGCTGATAACAAAAAC 177112 |||| | ||| | || |||| ||||| || ||| | | ||| | || Sbjct 9195832 GGCCTGAATAATTGCGAT-AGTTCTAACAGACTGGACCAAGCCATGCAGGTGACAGAGAC 9195774 Query 177113 AGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 177172 | | || ||||||||||||||||| || ||||| || ||||| ||||||||||| Sbjct 9195773 TCTCGGGATGACGCACTGTTGCATCAACCCTGTCATCTATGCCTTCGTCGGGGAGAAGTT 9195714 Query 177173 TAGAAG 177178 ||||| Sbjct 9195713 CAGAAG 9195708 Score = 113 bits (124), Expect = 5e-20 Identities = 212/306 (69%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 9991 TTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGC 10050 ||||| |||||||| |||| ||||||||| | || | |||| ||| | | | Sbjct 9196009 TTGCCCCTGCTCATCATGGTCATCTGCTACTCAGGGATCCTGAGAACCCTGCTTCGATGT 9195950 Query 10051 CCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTT 10110 | ||| |||||| ||||||| | ||||||||||| ||||||| | | ||| ||| Sbjct 9195949 CGGAGCGAGAAGAGACACAAGGCTGTGAGGCTCATCTTCACCATCATGATTGTCTACTTT 9195890 Query 10111 GTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT 10170 |||| ||| | ||||||||||| || ||||| ||| | ||||| || | || || || Sbjct 9195889 CTTTTCTGGGCTCCCTACAACATCGTCCTCCTCCTGACCACCTTCCA-GGAATTCT--TT 9195833 Query 10171 AACCTGCA-GTGTGCATTGAGCAGTAAC---TTGGACATGGCTCTGCTGATAACAAAAAC 10226 |||| | ||| | || |||| ||||| || ||| | | ||| | || Sbjct 9195832 GGCCTGAATAATTGCGAT-AGTTCTAACAGACTGGACCAAGCCATGCAGGTGACAGAGAC 9195774 Query 10227 AGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 10286 | | || ||||||||||||||||| || ||||| || ||||| ||||||||||| Sbjct 9195773 TCTCGGGATGACGCACTGTTGCATCAACCCTGTCATCTATGCCTTCGTCGGGGAGAAGTT 9195714 Query 10287 TAGAAG 10292 ||||| Sbjct 9195713 CAGAAG 9195708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 560/886 (63%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || || ||| || | || ||| | ||||| ||| | ||||| || | |||| || Sbjct 9308229 CTGGTCTTTGTCATCGGCTTGATTGGCAACATCCTGGTGGTCCTTGTCCTCATGCAGCAC 9308288 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | || | || ||| | | || | ||| | || | || |||| || |||||| |||| Sbjct 9308289 AGGAGGCTCCAAAGCATGACCAGCATCTACCTCCTCAATCTGGCCATCTCTGACCTGCTC 9308348 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGACTTT 9665 || || || || |||| || ||||| |||| | | ||| | || | ||| ||| Sbjct 9308349 TTCCTCTTCACGCTGCCCTTCTGGATTGACTACAAGTTGAAGGA--CA--ACTGGGTTTT 9308404 Query 9666 TGGTATTTCCCTGTGTAAACTGCTCA-GGGGTGTGTGTTACATGTCACTGTACAGCCAGG 9724 |||| | || |||| || ||||| ||||| | | |||| || |||||||| || Sbjct 9308405 CGGTAGTGCCATGTGCAAGCTGCTTTCGGGGTCT-TATTACCTGGGCTTGTACAGCGAGA 9308463 Query 9725 TCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTG 9784 |||||| |||||||||||| || | |||||||| || || | ||| ||||||| || Sbjct 9308464 TCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATCGTCCATGCTGTGTTTG 9308523 Query 9785 CTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 9844 | | || | | || || |||| ||| || | ||| | | |||||| |||| Sbjct 9308524 CAATACGGGCTCGGACTGTCACCTTTGGTATCATCACCAGCATCGTCACCTGGGCCCTGG 9308583 Query 9845 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAG-- 9902 | || || |||||| |||| |||| |||||| || ||| || Sbjct 9308584 CCCTCCTGGCTGCCGTCCCTGGCTTTTACTTT-------TCCAAGA-CCCAGTGGGAGTT 9308635 Query 9903 -----GGTTCAGTGTGATCCT-TACTACC--CAGAGATGTCTACAAATGTTTGGAGGCGC 9954 || || | ||| ||| || || | | || |||| | |||| ||| Sbjct 9308636 CACCCGGAACACCTGCAGCCTCCACTTCCCTCACCAAAGCCT-CAAA-GAATGGAAACGC 9308693 Query 9955 GCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTC 10014 ||| | | || ||| || | | || || |||||||| | | ||| ||| Sbjct 9308694 TTCCAGGCTCTGAAACTGAACATCCTGGGGCTGGTTCTGCCTCTGTTGGTCATGATCGTC 9308753 Query 10015 TGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCC 10074 |||||| | || |||| | ||| | || || |||| |||||||| |||||| Sbjct 9308754 TGCTACACGGGGATCATCAATATTCTGCTCAGTCGGCCCAATGAGAAGAAGGCTAAGGCC 9308813 Query 10075 ATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATT 10134 || | | || |||||||||||| | ||| || | |||||||| || |||||| | Sbjct 9308814 GTCCGCTTGATTTTTGTCATCATGCTCACCTTCTTCCTCTTTTGGACCCCTTACAACCTG 9308873 Query 10135 GTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGT 10194 | | | | ||| | || || | ||| | | | ||||||| |||||| Sbjct 9308874 ACTATGTTTGTCTCTGCTTTCCAAGAGTACCTGTTCACCAACCAGTGTGTGCAGAGCAGG 9308933 Query 10195 AACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAAC 10254 | ||||| |||| | | | | || | | |||||||| ||||| || ||||| Sbjct 9308934 GAGCTGGACGTGGCCATTCAGGTGACGGAGGTGATCGCCTACACTCACTGCTGTGTCAAC 9308993 Query 10255 CCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCAC 10314 || || ||||| | || ||||| |||| ||| | | |||| ||| || |||||| Sbjct 9308994 CCCGTCATCTATGTCTTTGTGGGTGAGAGGTTCCGGAAGTACCTCCGCCAGTTGTTCCAC 9309053 Query 10315 ACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTG 10360 | |||||||| | |||| ||||| | |||||||| |||| Sbjct 9309054 AGGCACGTGGCCGTGCACCTGGCCAAGTGGCTGCCCTTCCTCTCTG 9309099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 560/886 (63%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || || ||| || | || ||| | ||||| ||| | ||||| || | |||| || Sbjct 9308229 CTGGTCTTTGTCATCGGCTTGATTGGCAACATCCTGGTGGTCCTTGTCCTCATGCAGCAC 9308288 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | || | || ||| | | || | ||| | || | || |||| || |||||| |||| Sbjct 9308289 AGGAGGCTCCAAAGCATGACCAGCATCTACCTCCTCAATCTGGCCATCTCTGACCTGCTC 9308348 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGACTTT 176551 || || || || |||| || ||||| |||| | | ||| | || | ||| ||| Sbjct 9308349 TTCCTCTTCACGCTGCCCTTCTGGATTGACTACAAGTTGAAGGA--CA--ACTGGGTTTT 9308404 Query 176552 TGGTATTTCCCTGTGTAAACTGCTCA-GGGGTGTGTGTTACATGTCACTGTACAGCCAGG 176610 |||| | || |||| || ||||| ||||| | | |||| || |||||||| || Sbjct 9308405 CGGTAGTGCCATGTGCAAGCTGCTTTCGGGGTCT-TATTACCTGGGCTTGTACAGCGAGA 9308463 Query 176611 TCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTG 176670 |||||| |||||||||||| || | |||||||| || || | ||| ||||||| || Sbjct 9308464 TCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATCGTCCATGCTGTGTTTG 9308523 Query 176671 CTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 176730 | | || | | || || |||| ||| || | ||| | | |||||| |||| Sbjct 9308524 CAATACGGGCTCGGACTGTCACCTTTGGTATCATCACCAGCATCGTCACCTGGGCCCTGG 9308583 Query 176731 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAG-- 176788 | || || |||||| |||| |||| |||||| || ||| || Sbjct 9308584 CCCTCCTGGCTGCCGTCCCTGGCTTTTACTTT-------TCCAAGA-CCCAGTGGGAGTT 9308635 Query 176789 -----GGTTCAGTGTGATCCT-TACTACC--CAGAGATGTCTACAAATGTTTGGAGGCGC 176840 || || | ||| ||| || || | | || |||| | |||| ||| Sbjct 9308636 CACCCGGAACACCTGCAGCCTCCACTTCCCTCACCAAAGCCT-CAAA-GAATGGAAACGC 9308693 Query 176841 GCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTC 176900 ||| | | || ||| || | | || || |||||||| | | ||| ||| Sbjct 9308694 TTCCAGGCTCTGAAACTGAACATCCTGGGGCTGGTTCTGCCTCTGTTGGTCATGATCGTC 9308753 Query 176901 TGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCC 176960 |||||| | || |||| | ||| | || || |||| |||||||| |||||| Sbjct 9308754 TGCTACACGGGGATCATCAATATTCTGCTCAGTCGGCCCAATGAGAAGAAGGCTAAGGCC 9308813 Query 176961 ATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATT 177020 || | | || |||||||||||| | ||| || | |||||||| || |||||| | Sbjct 9308814 GTCCGCTTGATTTTTGTCATCATGCTCACCTTCTTCCTCTTTTGGACCCCTTACAACCTG 9308873 Query 177021 GTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGT 177080 | | | | ||| | || || | ||| | | | ||||||| |||||| Sbjct 9308874 ACTATGTTTGTCTCTGCTTTCCAAGAGTACCTGTTCACCAACCAGTGTGTGCAGAGCAGG 9308933 Query 177081 AACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAAC 177140 | ||||| |||| | | | | || | | |||||||| ||||| || ||||| Sbjct 9308934 GAGCTGGACGTGGCCATTCAGGTGACGGAGGTGATCGCCTACACTCACTGCTGTGTCAAC 9308993 Query 177141 CCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCAC 177200 || || ||||| | || ||||| |||| ||| | | |||| ||| || |||||| Sbjct 9308994 CCCGTCATCTATGTCTTTGTGGGTGAGAGGTTCCGGAAGTACCTCCGCCAGTTGTTCCAC 9309053 Query 177201 ACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTG 177246 | |||||||| | |||| ||||| | |||||||| |||| Sbjct 9309054 AGGCACGTGGCCGTGCACCTGGCCAAGTGGCTGCCCTTCCTCTCTG 9309099 >seq11 Length=52463945 Score = 174 bits (192), Expect = 2e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 43836508 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGGC 43836449 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||||||||||||||| |||||||| | || Sbjct 43836448 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 43836389 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || ||||| ||||| Sbjct 43836388 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 43836348 >seq13 Length=48154242 Score = 165 bits (182), Expect = 1e-35 Identities = 131/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||| || |||||||| || ||||| ||||||||||||||||| | ||| Sbjct 39520810 CAGCGCCGGAGCCGCAGTCTGAGGGTCTTCAGCTTCTCCCCCAGGGAGTTCACGTGCTCC 39520751 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || | | | | |||||||||||| |||||||||||||||||| | |||||||||||| Sbjct 39520750 TTGACAT---CTGGGCTGTGGTTCTCTGCCTGGGGCATCACCTCCACTAGGTAAAACTGG 39520694 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 39520693 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 39520657 Score = 104 bits (114), Expect = 3e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| | ||||| ||||| | ||| || ||||| | || || | ||| | || || Sbjct 3963785 AGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAAAAATGTGCATTCCCAAAGAA-TGC 3963843 Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTA-GGTCAGCAGGGAGTA 145790 || |||| | | || ||| |||||| ||| | | |||||| ||| ||||||| || Sbjct 3963844 ATAAAGTTATCTGACTGCAGGTCCGTGATGTGTGTAATCATGTAAGGTAAGCAGGGCATA 3963903 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 || | |||||||| ||||| |||| |||||| | || || | ||||||||| || Sbjct 3963904 GCACTCGATGTTGAAAGGCACGCCCAAGCCCATGACTCCTGACCTTTGGTACAGCCAACA 3963963 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||| |||||||| | | |||||||||||| | | ||||| || ||||| |||| Sbjct 3963964 GGACAGCTCCCCATTCACT--GTAGAACTGGCAGAAGGCATGGCATGGAGGCAGCACCAT 3964021 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 137929 TTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATG 137988 || ||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 39522945 TTTATCTTCGCTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTCATG 39522886 Query 137989 GCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 || ||||||| ||||| || || |||| Sbjct 39522885 GCTTTGTAGATGCCTTTCTCTTGAAGCT 39522858 >seq78 Length=8086754 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| | ||||| ||||| | ||| || || || | || || || | || || Sbjct 260162 AGCTGAATTTTCAGTGGCTCAATGTGATTTAGTTAAATATGTGCATCTCTCAAAGAATGC 260103 Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTA-GGTCAGCAGGGAGTA 145790 || |||||| | |||| ||| || ||| || || ||||| || ||| ||||||| || Sbjct 260102 ATAAAGTCCACTGGCTGCAGGTCCCTGATGTATGCAACCATATAAGGTAAGCAGGGCATA 260043 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 ||| | ||| |||| |||| |||| |||||| | || || | ||||||||| ||| Sbjct 260042 GCTCTCAATGCTGAAAGGCATGCCCAAGCCCATGACTCCTGATCTATGGTACAGCCAGCA 259983 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGG 145905 ||| ||||||| | || |||||||||||| || ||||| || |||||| Sbjct 259982 GGACAGCTCCCATTCA-CCTTGTAGAACTGGCAGAGAGCATGGCATGGAGGCAGG 259929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969531413720