Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq20 242 4e-59 seq3 104 3e-17 >seq20 Length=36831673 Score = 242 bits (268), Expect = 4e-59 Identities = 256/337 (76%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| || || | | | | || | ||||| ||||||| |||||| Sbjct 35572376 AGCAGGGCTTCAATGTCAGGTTCTATGTCGATTGTTGGAAAGCGGCGGCTGTATCTGCGC 35572317 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| ||||||| ||||||||| ||||||||||| | || |||||| Sbjct 35572316 ACGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATATCATTGCGG 35572257 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| | ||||||| ||| ||| | || ||| ||||| Sbjct 35572256 CACACCGGAGACCAGATGATGAATTTGGGGTCGGTCATGAGTGCACTGGGGTCATCGCTG 35572197 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||| ||||||||||| || ||||| |||||||| ||||||||| | | || || ||| Sbjct 35572196 GGCATTGGCAGGGCCTCCCGCAGGAATGCGAAGAGTGGATGTGCCTTGGAGCCATTCACC 35572137 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| || || |||||||| ||| || || ||||||| ||| Sbjct 35572136 TCGCACTTCTCGAAGAGGGGGAAATTGGGCTCGAACCCGCCACCGGGTCGGACGTACTTG 35572077 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| ||||| |||| Sbjct 35572076 AGGGAATTCAGAATCTCTTCGTTCTTCGCGTTCTCCT 35572040 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| |||| ||||| | || |||| Sbjct 35571813 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAAGCCCCGGGGCCCGAGGC 35571754 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||| ||||||||||| || ||||| ||||| | |||| | ||||| || || || | Sbjct 35571753 GCTCCTGTAGCTCGTTCATTTGGGTGTAGTCCCGAAGCGTGGTGCCTCAAAGAGAAGCCA 35571694 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | |||| | |||| ||| || || || | Sbjct 35571693 CATTCTCGATGAGCAGCACCTTGCCCCGCAGAGAGCCCAGACTCAAAGGCTCCCCGCCAG 35571634 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || ||||||| |||||| Sbjct 35571633 CCAGCGGGCGCGCGGAGAAGGTGTACAC 35571606 >seq3 Length=68631033 Score = 104 bits (114), Expect = 3e-17 Identities = 202/288 (70%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || ||||||||| || ||| Sbjct 26580132 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGCCTGC 26580074 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||| | || ||| | ||||||| Sbjct 26580073 TGGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTACGCAAGCAGTACAACTGCA 26580014 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGA-CCCGCTACGCCTGCGCTTGCTCCGGCACTA 50586 ||||||| |||||||| |||| || || ||||| ||| | || |||| ||||| Sbjct 26580013 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCCGCC-CGCATCAAGCTGATCCGCCACTA 26579956 Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| || || ||||| |||| ||||| ||| Sbjct 26579955 CGTGCAGCTGCTCTACCCCCGGGCCAAAAATGACCGCGTCTGGACTCTGGAGTTCGTGGG 26579896 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||| ||||||| | |||||| || |||||| Sbjct 26579895 CAAGCTGGACGAGCGCTGCAGGCGCCG--GGACACGGAGCAGAGGCGC 26579850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608686128351720