Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq83 123 2e-23 seq138 107 2e-18 seq9 104 2e-17 seq17 102 7e-17 >seq83 Length=7591375 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||||| || ||||| ||||| | |||||| | |||| Sbjct 414024 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 413965 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 413964 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCT 413905 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| ||||||| |||| ||| |||||| Sbjct 413904 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 413845 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || | || || || || || |||||| Sbjct 413844 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATT 413812 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||||| || ||||| ||||| | |||||| | |||| Sbjct 414252 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 414193 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 414192 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCT 414133 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| ||||||| |||| ||| |||||| Sbjct 414132 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 414073 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 414072 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || || || || || | || || || | || Sbjct 343415 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCT 343474 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| ||||| ||| | || || ||||||||||| ||| | |||||| || || Sbjct 343475 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 343534 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| ||||||| |||| ||| |||||| Sbjct 343535 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 343594 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || | || || ||||| || |||||||||| Sbjct 343595 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTGA 343631 >seq9 Length=54061371 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | || || || | || Sbjct 30845436 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 30845377 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||| | ||||| ||| | || || ||||||||||| || | |||||| || || Sbjct 30845376 TCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 30845317 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| | ||||| | |||| ||| || ||| Sbjct 30845316 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTC 30845257 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || | || || | ||| || |||||||||| Sbjct 30845256 TTGCCAGTCAGGGTCTTCATAAAGATCTGCATTTTGA 30845220 >seq17 Length=43943611 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | || || || | || Sbjct 21311337 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 21311396 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| | || ||| | || |||||||||||||| ||| | |||||| | || Sbjct 21311397 TCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCC 21311456 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | | ||| ||||||| |||| ||| ||||| Sbjct 21311457 TGGATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTC 21311516 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | ||||| ||||| || ||||||||| Sbjct 21311517 TTGCCAGTCAGGGTTTTCACAAAGATGTGCATTTTG 21311552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422184357591788