Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq83 176 5e-39 seq161 172 6e-38 seq17 114 1e-20 seq82 98.7 1e-15 seq9 96.9 4e-15 seq30 87.8 2e-12 >seq83 Length=7591375 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || ||| Sbjct 414041 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 414100 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 414101 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 414160 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||| |||||||| |||| ||||||||| |||||||||| Sbjct 414161 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 414220 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || ||| ||||||||||||| || Sbjct 414221 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCTTGAGGGGAGG 414267 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || |||||||| ||||||||| | || || || ||| Sbjct 413812 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 413871 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| |||||||||||| | ||||| Sbjct 413872 TGACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCA 413931 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 413932 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 413991 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| ||||| || ||| |||| Sbjct 413992 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 414027 >seq161 Length=830332 Score = 172 bits (190), Expect = 6e-38 Identities = 519/801 (65%), Gaps = 28/801 (3%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || ||| | |||||||| |||| || | || || || || |||||| | Sbjct 530706 GAACCACTACTGAGAAAGAACCCCTGCCGCTTGGCCATCTTTCCTATGGAATACCATGGT 530647 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||| || || || ||||| || || ||||| | ||||||||||| || Sbjct 530646 ATCTGGCAGATGTGTAATAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGTGGCTCT- 530588 Query 116696 TCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||| ||||| ||| ||||||| | |||| | || | |||| || || Sbjct 530587 TCCAGGGACATTCAGC-ACTGGGAAGCCCTGAAGCCTGAGGAATGATATTTTATATCCCA 530529 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TT 116813 | | ||||| || | || || || || ||||| || || |||||| |||| ||||| || Sbjct 530528 CTTTCTGGCTTTCTCTGCGGCAAGTGATGGCATAGTAAATGAGAATTTGGTGGAGCGATT 530469 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | || || || || || | | || || || | ||||| ||||| || || ||||||| Sbjct 530468 TAGC-CAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGCCATGG 530410 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 | ||| | || || ||||||||| ||| || ||||| ||| | || | | Sbjct 530409 AAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGACTCCAAAG 530350 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 | | | | | || || ||||| | || ||||| || || || |||| ||||| | Sbjct 530349 AAAGGGAATTTCTCTTCAATGCCATTGTAACAATGCCTTGTGTGAAGAAGAAAGCCGATT 530290 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||| |||| | ||| | | || |||||| ||| || || || | || ||||| | Sbjct 530289 GGGCCTTGCGTTTGATTGGGGACAAAGAGGCTACCTATGGAGAACGTGTTGTAGCCTTTG 530230 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | || || ||||| |||||||||| ||||||||||| Sbjct 530229 CTGCTGTGGAGGGAATCTTCTTTTC-----------------------TGCTCAAGAAAC 530193 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || || ||||| ||||| || || ||| || || || || || ||||| | | Sbjct 530192 GAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAAAGATGAGGGCTTAC 530133 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 | || ||||||||||| || ||||||| || || |||| ||| | | | | | Sbjct 530132 ACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTGCACAAACCATCAGAGCAGAGAG 530073 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 | | || | | | | | || ||| | || || ||| |||||||| ||||| ||| Sbjct 530072 TAAAAGAAACAATTATCAATGCTGTCACAATAGAACAGGCGTTCCTCACAGAAGCCTTGC 530013 Query 117294 CGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCG 117353 | | | || | || | |||||| |||| ||| ||||| || || || || | Sbjct 530012 CTGAGAAGCTAATTGGGATGAATTGCACTTTGATGAAGCAGTACATTGACTTTGTGGCAG 529953 Query 117354 ACAGGCTGCTGCTCGAGCTGG 117374 | ||||| |||| ||||||| Sbjct 529952 ATAGGCTTATGCTGGAGCTGG 529932 >seq17 Length=43943611 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| || || ||||| |||| |||| | || || || || Sbjct 21311551 AAAATGCACATCTTTGTGAAAACCCTGACTGGCAAGACCACCACCCTGGAGGTGGAGCCC 21311492 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || | ||| ||||| ||| | ||| Sbjct 21311491 AATGACATCATTGAGAATGTGAAGGCCAAGATCCAGGATACAGAAGGCATTCCCCCTGAC 21311432 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||||| | || || | |||||||| || | ||||| || |||||| Sbjct 21311431 CAGCAGAGACTCATATTTGCAGGGGAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 21311372 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| ||||| || || | || ||||||| ||| Sbjct 21311371 AACATCCAGAAAGAGTCCACCCTGCACCTGGTTCTTCGTCTGAGGGGTGGC 21311321 >seq82 Length=7573503 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || ||||| |||||| || ||| || | || || | || | |||| || Sbjct 1079026 GAACCACTACTGCGAGAGAACTCC-GCCACTTTGCCATGTTTGCTATCAATTACCACGAT 1078968 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || || |||||||| || |||||||| | ||||||||||| || Sbjct 1078967 ATTTGGCAAATGTATAAGAAAGCCGAGGCTTCCTTCTGGACAGCGGAGGAGGTGGATCTT 1078908 Query 116696 TCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||||| ||| |||||||| | |||| | || | |||| || || Sbjct 1078907 TCCAAGGACAGTCAGC-ACTGGGAGGCCCTGAAGCCTGAGGAATGATATTTTATATCACA 1078849 Query 116755 CGTGCTGGCCTT-TTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-T 116812 || || || || ||| ||| | || ||||| | | || |||||||| |||| | Sbjct 1078848 TGTTCTAGCTTTCTTTGAACGCATGTGATGGCATAGCAAGTGAAAATCTGGTGCAGCGAT 1078789 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || || || ||||| || | || || | || |||| ||||| || || |||||| Sbjct 1078788 TTAGC-CAAGAGGTTCAAATTATAGAAGCCGGCTGTTTCTGTGGCTTCCAAATTGCCATG 1078730 Query 116873 GAGAACGTGCACTCGGAAATGTAT 116896 || ||| | || || ||||| ||| Sbjct 1078729 GAAAACATACATTCTGAAATATAT 1078706 >seq9 Length=54061371 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || | || || || || ||||| || |||||| | || | || | Sbjct 30845222 AAAATGCAGATCTTTATGAAGACCCTGACTGGCAAGACTATCACCCTGGAGATGGAGCTC 30845281 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || ||||| ||||| || | ||| Sbjct 30845282 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAAGAAGGCATTCCTCCTGAC 30845341 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| | |||||| || | ||||| || |||||| Sbjct 30845342 CAGCAGAGGCTCATCTTTGCAGGCAAGCTGCTGGAAGATGGCCGCACTCTTTCTGACTAC 30845401 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| ||||| || || | | ||||||| ||| Sbjct 30845402 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCCTCTGAGGGGTGGC 30845452 >seq30 Length=30016984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| || | ||||| ||| Sbjct 13544296 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCAGT 13544355 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||| ||| |||| ||||||||| | | || || Sbjct 13544356 GACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGAT-AG 13544414 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || || ||||||||||| || | ||||| ||| || |||||| Sbjct 13544415 CAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACAAC 13544474 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || | | ||| | | | |||| || ||| Sbjct 13544475 ATCCAGAAAGAATCCACTCTATACTTGGTGCTTCACCTGAGAGGTGGC 13544522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515125539589680