Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq138 91.5 2e-13 >seq138 Length=1287892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || || | ||| | || | | Sbjct 343627 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 343568 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || ||||||||||| || || ||||| || Sbjct 343567 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCA 343508 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || |||||||| || || || || ||| | || || | ||||| || Sbjct 343507 GCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGTACTCTTTCTGATTACAA 343448 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| || ||||| || || |||| |||| | ||| | | ||||| Sbjct 343447 TATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 343400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755318667542400