Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq30 123 2e-23 seq83 109 5e-19 seq25 87.8 2e-12 >seq30 Length=30016984 Score = 123 bits (136), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||||| | || || ||||| || ||||||||||| | |||||| |||||| Sbjct 13544504 CACCAAGTATAGAGTGGATTCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTC 13544445 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||| |||||| ||| || | ||||||||| ||||| Sbjct 13544444 CAGCTGTTTACCTGCAAATATCAGATGCTGCT-ATCAGGTGAGATGCCCTCCATGTCTTG 13544386 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| ||| || | |||| |||||| || |||||||| || ||| | || || Sbjct 13544385 AAATTTCGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTCTT 13544326 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 13544325 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 13544296 >seq83 Length=7591375 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | || ||||| ||| | || ||||| || || |||||||| ||| Sbjct 414268 ACCTCCCCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 414209 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| || || ||||| || || || |||| | | |||||| ||||| || Sbjct 414208 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGG 414149 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||||||| || || || || | || | |||||| || ||| || Sbjct 414148 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 414089 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || ||||| ||||| || || || || |||||||| Sbjct 414088 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| ||| || |||||| || Sbjct 414025 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 413966 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| | | |||||| ||||| || |||||||||||||| Sbjct 413965 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 413906 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 413905 TTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 413846 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 413845 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 413813 >seq25 Length=31340621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| ||| | || | || ||||| || ||||||||||| || || ||| || | Sbjct 4762696 CTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCA 4762755 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || || || || ||||| |||| || | |||||||| ||||| || | ||||| Sbjct 4762756 TCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAAT-TCTTCCTTA 4762814 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || ||| || | ||| | ||||||| | || ||||||| || Sbjct 4762815 TCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTATTA 4762874 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||||||||||||||| Sbjct 4762875 GTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433753506679756