Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3 104 4e-17 >seq3 Length=68631033 Score = 104 bits (114), Expect = 4e-17 Identities = 111/143 (78%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| || |||||||| ||||||||| | || ||||| Sbjct 3242031 GCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATGGG 3241972 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | |||| | ||| || | ||||||| |||||| ||||||||||| || || || || Sbjct 3241971 TTAACCGCCTTTGGCCCGTGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTAACCAT 3241913 Query 52176 AATGCAGTTGGTACAGTTCCATA 52198 ||||| |||| |||| |||| Sbjct 3241912 GTTGCAGCTGGT-GAGTTACATA 3241891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923028974361720