Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq67 273 2e-68 seq161 219 4e-52 seq19 107 2e-18 seq7 89.7 5e-13 >seq67 Length=10555288 Score = 273 bits (302), Expect = 2e-68 Identities = 594/877 (68%), Gaps = 24/877 (3%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || |||| | || ||||||||||||||||| || ||||| ||||| |||||| Sbjct 3668887 TGATACTCTGAAACT-TGTTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 ||||||||||| ||||||| || | | || | |||| | ||||| | |||| Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAAT 3668769 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 || || || |||||||| |||||||| |||| ||| |||||||||| | || | | Sbjct 3668768 CTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 3668709 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186 || || | ||||||||||||| | | || || || || || | || || || || Sbjct 3668708 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCC 3668649 Query 16187 CTTACTACACTATTTAACGGAGGG----TTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 || || || || | || | |||| ||||| | |||||||| |||||||| Sbjct 3668648 CTCACC---CTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAA 3668592 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 ||| | | | | |||| || || | || | ||| || ||||||| || || || || Sbjct 3668591 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGAT 3668532 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 | |||| || || | ||| || ||||| ||||| || || || ||||| || ||||| Sbjct 3668531 GGGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTC 3668472 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422 || || | || |||| || || || | || ||| || | |||||||| Sbjct 3668471 CACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCA 3668412 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 ||||| | || ||||| ||||| | ||| | | ||||||||||||||| | Sbjct 3668411 CAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAA-A 3668353 Query 16483 Atttt--tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 |||| |||||| | |||| || |||||||||||| ||||| || || | ||| Sbjct 3668352 ATTTCCCTTTCTTGGG-ATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAG 3668294 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 |||| ||||| || || ||||||||||| || || | ||| || || | ||| || Sbjct 3668293 TGAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACC 3668234 Query 16601 TCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 || || |||| | | || | || ||||| || | ||||||| || | ||||||||| Sbjct 3668233 TCCTGACTAAAGC-TCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAA 3668175 Query 16660 C---GCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA---AAGTTTTAACCAGTC 16713 || | || || | ||||| || || |||||| ||| || | ||| Sbjct 3668174 AAAAGCTAAGATATGAGAGAGAAAATAATTCTC---ATCTGATTTAAGCTTGTTCTAGTG 3668118 Query 16714 AGAAAAATCTTTTGATAAA-TCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | | ||| ||||||||| || ||||||||| | ||||| || || || |||| || Sbjct 3668117 AAGGAGATCCTTTGATAAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTT 3668058 Query 16773 TATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 |||||||||||| || || ||| ||| ||||| Sbjct 3668057 CATACATTTTCCAAATATCGGGGTACTGAATTGGAAA 3668021 >seq161 Length=830332 Score = 219 bits (242), Expect = 4e-52 Identities = 613/937 (65%), Gaps = 48/937 (5%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||| | | ||| | | ||| ||||||| || ||| ||||| ||| ||| Sbjct 529767 TTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATCC 529826 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| | | |||||||| |||||||| || || || ||||||| ||||||||| | Sbjct 529827 TCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 529886 Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 ||||||| ||||| ||||||| ||||| || | || | | |||| |||| Sbjct 529887 CCATAAAGTCAAATGGATTTTCTACTTTGAA-AACCTTGTTAA----AGCCCAGCTCCAG 529941 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || | ||||| |||||||| || || ||||| ||||| ||| || ||||| || || Sbjct 529942 CATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 530001 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || || |||| | |||||||| | || | |||||| | || || | || || Sbjct 530002 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAAT 530061 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATAC 16235 | | ||| ||||| | || | | || ||||| | | |||||| ||||| | | Sbjct 530062 TGTTTCTTTTACT-CTCTGCT---CTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGC 530117 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| ||||| || || || || || | || || | || || |||||||| || | Sbjct 530118 AGGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGC 530177 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||| ||||||||||| || | |||||||||| | Sbjct 530178 CAGGCATCAGTCCTCGTTTCTT-----------------------GAGCAGAAAAGAAGA 530214 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttc 16413 | || || || || ||||| || || | || || || || || || ||| | | | Sbjct 530215 TTCCCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCC--CC 530272 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||| | ||||||| ||||| | || ||||| ||| | | || ||||| Sbjct 530273 AATCAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATT 530332 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | | | | |||||||| ||| ||| ||||| || || || | ||||||||| Sbjct 530333 GAAGAGAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACAT 530392 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| ||||| || || ||||| || || || || ||||| || | | ||||| | || Sbjct 530393 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAAT 530452 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| | ||| | || | || || || || ||||| ||||| || || || Sbjct 530453 TTGAACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGC 530512 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGT 16712 | | || || || | ||| ||||||| | ||| | | || | | || ||||| Sbjct 530513 AGAGAAAGCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTT-CCCAGT 530571 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 || || | || | | | ||||| || | |||||||| ||||| |||| || | Sbjct 530572 GCTGAATGTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTAT 530630 Query 16773 TATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 || |||| | ||| || | | ||| | |||||||| Sbjct 530631 TACACATCTGCCAGATACCATGGTATTCCATAGGAAA 530667 >seq19 Length=38427206 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | || || ||||||||| | | | || |||||| | | Sbjct 3902799 TTTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATAACGGCAAAAC 3902858 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 3902859 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 3902918 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 3902919 CCATAAAATCAAAGGGATTTTCTG 3902942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||||| ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 3909462 ATCCCAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 3909521 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||||||| || || | ||| || | |||||||||||||| Sbjct 3909522 AGTTCATCCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 3909564 >seq7 Length=60492774 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || || || || || ||||| || Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 54099367 Query 16379 AC 16380 || Sbjct 54099368 AC 54099369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462427921099800