Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq8 1337 0.0 seq33 141 6e-29 >seq8 Length=54407132 Score = 1337 bits (1482), Expect = 0.0 Identities = 1285/1650 (78%), Gaps = 62/1650 (4%) Strand=Plus/Minus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || |||||| | | | |||||||||||| | | |||||| || ||| ||| ||| Sbjct 21107690 AGGCTCCTAGGCATGTGTGTAATGAGGATATTTGACCAGAGAAGAAATATATTTTTGCCA 21107631 Query 107196 TCACTCTGGAGTTGAACTTGA--------------TGTTCTGGATTAGTTTGTAATTAAA 107241 ||| | |||||||| |||||| ||||| |||| ||| ||||| | Sbjct 21107630 TCAGTTTGGAGTTGCACTTGACATTGCTGGGAACATGTTCATGATTCATTTATAATTGGA 21107571 Query 107242 GGCATTTTGTTCTGTCCAAGGAT--CTC-CTCCTCCACCTTGCC------TGTGCCCAAA 107292 ||||||||||| |||||||||| ||| ||||||||||| | ||| | |||| Sbjct 21107570 GGCATTTTGTTTTGTCCAAGGAGTCCTCTCTCCTCCACCTCCTCCTCCATTGTACACAAA 21107511 Query 107293 CTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGAC 107352 |||| |||| || || |||| ||| | |||| ||| || | |||| Sbjct 21107510 CTCTG----TCTCTCAACCTGTGAAAATGATTTCATGGAGGAAA---CTCTCCCGGCATT 21107458 Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 |||| | |||||||| ||| | ||||||||||||||||||||| ||||||||||||| Sbjct 21107457 ATCACTTATGGGCCCTTGGCGGTTATATGCTGCTGGCCGTTGTTGCTCTGAGACTTTCTT 21107398 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 |||| || || |||||| ||||| |||| || || || || || Sbjct 21107397 TCAGATTGAAGTGTGAT---------------CTGGACTCCACAGAATTTCAAAGCCAAT 21107353 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||||||||| Sbjct 21107352 ACTGTAGGGATAAGTTGTACAAGTCCCTAAAGCTGCCAGCAAGGAGGTCCATCAACTGTT 21107293 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 ||||||||| |||||||||| |||||||||| ||||||| | || | || ||||| Sbjct 21107292 CTGGGATCATCCGAGGGGACCGGGAAGCAGTGATCCAGGCTATTCTGAATAATCTGGAGA 21107233 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 | ||||| || ||| |||| ||| || | | ||||| | ||||||||||||| Sbjct 21107232 TCAAGAAGAAACGGGAGCCTTTCAATGATATTGACTACCTTCGTCTGACCAGAGACTGTG 21107173 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 ||| ||| ||||| |||||||||||||||||||||| |||| ||||||||| |||| | Sbjct 21107172 AGCACTTTAAGGCTACAAGGAAGTTCATACAGTTCCCATTGAGCAAAGAAGAGTTAGATT 21107113 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 |||| ||||| ||||| ||||| || |||||||||||||||||||||||| ||||||| | Sbjct 21107112 TCCCTATTGCATACTCTATGGTAGTTCATGAGAAGATTGAAAACTTTGAAAGGCTGCTTC 21107053 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 | || ||||||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 21107052 GGGCTGTGTATGCCCCTCAGAATATATACTGTGTCCACGTGGATCAGAAGTCCCCAGAAA 21106993 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 ||||||||||||| || | || |||| ||| |||||||| ||||||||| | ||||||| Sbjct 21106992 CTTTCAAAGAGGCAATCCATGCGATTACTTCATGCTTCCCAAATGTCTTCGTAGCCAGTA 21106933 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 || |||| | ||||||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 21106932 AGCTGGTTCGGGTGGTTTATGCCTCATGGTCCAGGGTTCAGGCTGACCTGAACTGTATGG 21106873 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 |||| |||||||||||| ||||||||||||| ||||| || |||||||| |||||||||| Sbjct 21106872 AAGATTTGCTCCAGAGCCCAGTGCCATGGAAATACTTCCTAAATACATGTGGGACAGACT 21106813 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | || |||||||||||||| |||||||||| |||||||||||||||||| || ||||||| Sbjct 21106812 TTCCTATAAAGACCAATGCTGAGATGGTCCAGGCCCTCAAGATGTTGAATGGGAAGAACA 21106753 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132 |||||||||| ||| ||||| |||||| ||||||| ||||||||||| | ||||| || Sbjct 21106752 GTATGGAGTCAGAGATACCTACTGAGTTTAAAAAAAGACGCTGGAAATATCACTATGTGG 21106693 Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192 ||| ||||| | |||| || | ||| ||||| ||||| ||| |||||||| ||| Sbjct 21106692 TGAAAGACATATTGTATATAACTAATGAGAAAAAGGATCCTCCTCCTAATAATTTAACCA 21106633 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 ||||||| |||||||| ||| ||||||| ||| ||| ||| | || ||||||||| | Sbjct 21106632 TGTTCACTGGGAATGCTTATATTGTGGCTTCTAGAGACTTCATTCAGCATGTCTTAACGA 21106573 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 |||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||| Sbjct 21106572 ACCCTAAATCCCAACAACTGATCGAATGGGTAAAAGACACCTATAGCCCTGATGAACACC 21106513 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 | ||||||||||||||||| || | |||||||||||||||||||| ||| ||||| Sbjct 21106512 TTTGGGCCACCCTTCAGCGGGCCTCATGGATGCCTGGCTCTGTTCCCTTAAACCACAAGT 21106453 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 || |||| || ||||||| | |||| |||||||| |||||||||||| || ||||||| Sbjct 21106452 ATGACATTTCTGACATGATTTCCATTGCCAGGCTAATCAAGTGGCAGTCACATGAGGGAG 21106393 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 || ||| | |||||| |||||| ||| || ||||||||||| | | || | ||||| | Sbjct 21106392 ATATCAATAAGGGGGCATCTTATGAACCTTGTTCTGGAATCCACCAGCGGACTATCTGTA 21106333 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 |||| || || ||||| ||| | ||||| || || ||||||||||| ||||| ||||||| Sbjct 21106332 TTTATGGTGCTGGGGATCTGCATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGT 21106273 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 ||||||| | ||| |||||||| || || ||||| |||||||| || |||||| ||||| Sbjct 21106272 TTGACCCAAAGGTAGATGATAATGTTCTTCAGTGTTTAGAAGAATATCTACGTTTTAAGG 21106213 Query 108613 CCATCTATGGGACTGAACT-------------TTGAGCTGCACTGTGGGCCAGGGAC-TG 108658 |||| |||||||| ||||| ||| ||| | ||||| | |||| || || Sbjct 21106212 CCATTTATGGGACAGAACTGTAAGATATACTGTTGTGCTAC-CTGTGAGGCAGGAACATG 21106154 Query 108659 TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATC 108718 ||| |||||| | | |||| || || ||||||| | |||||| |||||| Sbjct 21106153 TGCAAACATG--CTATAATTGCTGGGACAATGAAGGGTGGGAATCCAGGGCTTGGGAATC 21106096 Query 108719 CATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||| ||| | || || || || Sbjct 21106095 TATGGCATCCCTTAGGATAAGGGGACTACT 21106066 >seq33 Length=24047555 Score = 141 bits (156), Expect = 6e-29 Identities = 577/888 (65%), Gaps = 31/888 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | |||||| ||||| || || || ||||| ||| | || Sbjct 18067071 CCTCTTAGTAAAGAAGAGGAAAGCTTCCCAATTGCATATTCCATAGTGGTTCATCACAAA 18067130 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 18067131 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 18067190 Query 107808 CACGTGGATGTGAAGTCCCCAGA-GACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 || || || || | |||| |||| || | || ||||| | || ||| ||| Sbjct 18067191 CATGTAGACAAAAAAT---CAGAGGACTCCTTTATAGCAGCGGTAATGGGCATCGCATCC 18067247 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| || ||||| |||||||| |||||| || |||||||| |||||| Sbjct 18067248 TGTTTCAGTAACGTCTTTGTGGCCAGTCAGTTGGAGAATGTAGTTTATGCATCCTGGAGT 18067307 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || || || || ||||| ||| | ||| | || |||| | ||||||| |||| Sbjct 18067308 CGGGTTCAGGCCGATCTCAACTGCATGAAGGACCT-CTACAGA-ATGAGTGCCAATTGGA 18067365 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| || ||| ||| || || | || ||||| || || ||| Sbjct 18067366 AGTACTTGATCAATCTTTGTGGGTTAGATTTTCCTACTAAAACCAACCTGGAAATTGTCA 18067425 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099 | |||||| || | |||| | |||| |||| | | || | || ||| | Sbjct 18067426 GGAAGCTCAAGTCATTCATGGGTGAAAACAACCTGGAAACGGAAAAGATGCCATCTAA-- 18067483 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC--ACACTGTAC-CCTACCA 108156 ||| || | | ||||| | | ||| ||| | || | | | || ||| Sbjct 18067484 -TAAAGAAGAAAGGTGGAAGAAGCATCATGTGGTCATTAACGGAAAGTTGACTAATACGG 18067542 Query 108157 GCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 | | | || | | ||| || || ||| |||| | || | ||||||||||| Sbjct 18067543 GGACTGTCAAAGTGCATCCTCCACTCAAAACACCTCTGTTTTCGGGCAGTGCCTATTTTG 18067602 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTT 108275 ||| | | | | | || |||| |||| || || || | |||| | | Sbjct 18067603 TGGTCAGTAGGGAGTACGTGAGGTATGTGCTAGAGAATGAAAACATTCAAAAG-TTCATG 18067661 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||||| || ||||| || || | ||||||||||| ||||| | | | Sbjct 18067662 GAGTGGGCACAAGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG-GAT 18067720 Query 108336 CCGTG-GATGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || ||||| | |||| ||||| ||||||| || | || |||||| | Sbjct 18067721 CCCTGAGGTCCCAGGCTCCCTGTCCTTAAGCCA---CAAGTATGACTTGTCTGACATG-C 18067776 Query 108392 TGCCA-TCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 | || | |||||| | ||||||||||||||| || || || || | ||| || | Sbjct 18067777 AGTCAGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTTGCCCAGGGTGCAC 18067836 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 |||| |||||||| || ||||| | | | | || ||| ||| || || ||| Sbjct 18067837 CTTACCCACCCTGCAGCGGGGTCCATGTGCGCTCAGTGTGTGTTTTCGGAGCTGGCGACT 18067896 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558 || ||||||| || | || || ||| | || || || |||||||||| Sbjct 18067897 TGAACTGGATACTACGTAAGCACCACTTTTTTGCCAATAAGTTTGACC 18067944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348207071858382